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Os01g0276800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0138) R2 : 0.0411
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.128 (0.029) R2dN8 : 0.053 R2N8 : 0.0411
σ : 0.259
deviance : 30.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.99 0.176 11.2 0.218 0.517 -0.477 0.227 -0.345 0.0988 1.63 23.2 35 -- --
14.1 0.176 11.2 0.18 0.513 -0.429 0.124 -- 0.0916 1.61 23.2 29 -- --
14.12 0.176 11.2 0.192 0.515 -0.454 -- -0.151 0.0943 1.6 23.1 31 -- --
14.16 0.176 11.2 0.176 0.513 -0.433 -- -- 0.0916 1.61 23.1 31 -- --
24.96 0.233 11.2 0.124 -- -0.49 -- -0.0106 0.0456 -- 27.95 1014 -- --
16.43 0.19 11.2 0.269 0.449 -- 0.137 -- 0.15 1.73 -- -- -- --
16.51 0.19 11.2 0.265 0.449 -- -- -- 0.149 1.72 -- -- -- --
24.94 0.233 11.2 0.138 -- -0.485 -- -- 0.0502 -- 28.4 1000 -- --
14.91 0.181 11.2 -- 0.526 -0.498 -- -- 0.0632 1.6 23.22 19 -- --
28.76 0.251 11.2 0.283 -- -- -- -- 0.16 -- -- -- -- --
18.36 0.2 11.2 -- 0.454 -- -- -- 0.12 1.74 -- -- -- --
25.38 0.235 11.2 -- -- -0.549 -- -- 0.0251 -- 28.3 1007 -- --
30.87 0.259 11.2 -- -- -- -- -- 0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.55 temperature 25 90 < th dose dependent rect. 16 11
2 12.56 temperature 25 270 < th dose dependent rect. 16 9
11 12.63 temperature 25 90 < th dose dependent sin 15 NA
13 12.64 temperature 25 10 < th dose dependent rect. 17 9
33 12.73 temperature 20 10 > th dose independent rect. 20 10
76 12.90 temperature 20 10 > th dose independent sin 13 NA
149 13.05 temperature 20 10 < th dose independent sin 13 NA
164 13.10 temperature 20 10 > th dose independent rect. 9 23
178 13.14 temperature 15 270 > th dose dependent rect. 18 11
214 13.20 temperature 15 90 > th dose dependent rect. 20 10
255 13.28 temperature 20 90 < th dose independent rect. 17 10
268 13.30 temperature 20 90 < th dose independent rect. 19 8
269 13.30 temperature 20 90 < th dose independent rect. 17 12
270 13.30 temperature 20 90 > th dose independent rect. 15 15
291 13.33 temperature 20 10 < th dose independent rect. 18 8
301 13.34 temperature 20 90 < th dose independent rect. 19 6
306 13.34 temperature 20 10 < th dose independent rect. 18 12
307 13.34 temperature 20 90 > th dose independent rect. 9 21
309 13.34 temperature 25 270 < th dose dependent rect. 21 1
317 13.35 temperature 20 90 > th dose independent rect. 11 19
371 13.41 temperature 20 10 > th dose independent rect. 12 18
401 13.43 temperature 20 10 > th dose independent rect. 16 14
413 13.43 temperature 15 10 > th dose dependent rect. 20 10
473 13.50 temperature 20 90 < th dose independent rect. 13 14
500 13.52 temperature 20 10 < th dose independent rect. 14 16
509 13.53 temperature 20 90 < th dose independent rect. 21 4
517 13.53 temperature 20 10 < th dose independent rect. 14 12
632 13.59 temperature 15 720 > th dose dependent rect. 18 3
760 13.63 temperature 20 30 < th dose dependent rect. 17 17
882 13.67 temperature 20 30 < th dose dependent rect. 19 15
889 13.67 temperature 20 30 < th dose dependent rect. 13 21