BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0747800 Os01g0747800|AK073166
         (231 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0747800  VQ domain containing protein                        310   7e-85
Os05g0519000  VQ domain containing protein                        160   1e-39

>Os01g0747800 VQ domain containing protein
          Length = 231

 Score =  310 bits (793), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 172/231 (74%), Positives = 172/231 (74%)

Query: 1   MEPSTKQLLPMPQQDPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIETTPFPT 60
           MEPSTKQLLPMPQQDPN                                  TIETTPFPT
Sbjct: 1   MEPSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPRPVPRTIETTPFPT 60

Query: 61  TFVQADTASFKQVVQMLTGAEQPSKNXXXXXXXXXXXXXXXXXXXXXXXXXPCRPKKPAF 120
           TFVQADTASFKQVVQMLTGAEQPSKN                         PCRPKKPAF
Sbjct: 61  TFVQADTASFKQVVQMLTGAEQPSKNAATAATAAAGNSSAAGIGGGQGANGPCRPKKPAF 120

Query: 121 KLYERRSSLKNLKMIAPLAMGALPSPTGRKVGTPEILSPSVLDFPSLKLSPVTPLTGEPF 180
           KLYERRSSLKNLKMIAPLAMGALPSPTGRKVGTPEILSPSVLDFPSLKLSPVTPLTGEPF
Sbjct: 121 KLYERRSSLKNLKMIAPLAMGALPSPTGRKVGTPEILSPSVLDFPSLKLSPVTPLTGEPF 180

Query: 181 NRSPASSSEDAERAAISERGFFLHPSPRGAEPPRLLPLFPVTSPRMAAPSE 231
           NRSPASSSEDAERAAISERGFFLHPSPRGAEPPRLLPLFPVTSPRMAAPSE
Sbjct: 181 NRSPASSSEDAERAAISERGFFLHPSPRGAEPPRLLPLFPVTSPRMAAPSE 231



>Os05g0519000 VQ domain containing protein
          Length = 270

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 124/188 (65%), Gaps = 24/188 (12%)

Query: 52  TIETTPFPTTFVQADTASFKQVVQMLTGAEQ--PSKNXXXXXXXXXXXXXXXXXXXXXXX 109
           TI+TTPFPTTFVQADTASFKQVVQMLTG++   PS+                        
Sbjct: 72  TIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPPSQRPPAKSNHHQHHHSGA-------- 123

Query: 110 XXPCRPKKPAFKLYERRSSL-KNLKMIAPLAMGALP----SPTGRKVGTP---EILSPSV 161
             PCRPKK AFKLYERRS + KN KMIAPLAM A      S + RK       E LSPSV
Sbjct: 124 --PCRPKKQAFKLYERRSGVHKNFKMIAPLAMAAAAAAGASSSPRKAAQHQQQEALSPSV 181

Query: 162 LDFPSLKLSPVTPLTGEPFNRSPASSSEDAERAA----ISERGFFLHPSPRGAEPPRLLP 217
           LDFPSL LSPVTPL  +PFNRSPAS+S  A        I+++GFFLHPSPR AEPPRLLP
Sbjct: 182 LDFPSLALSPVTPLVADPFNRSPASASSSASPEEEAAAIAQKGFFLHPSPRSAEPPRLLP 241

Query: 218 LFPVTSPR 225
           LFPVTSPR
Sbjct: 242 LFPVTSPR 249



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,744,575
Number of extensions: 279990
Number of successful extensions: 783
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 133
Effective length of database: 11,918,829
Effective search space: 1585204257
Effective search space used: 1585204257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)