FiT-DB / Search/ Help/ Sample detail

Os01g0747800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : VQ domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0165) R2 : 0.667
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.31 (0.0433) R2dC : 0.67 R2C : 0.665
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0529 (0.0348) R2dN8 : 0.00218 R2N8 : -0.00305
σ : 0.312
deviance : 44.36
__
_____
C
peak time of C : 6.25
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.45 0.272 12.5 0.349 1.18 0.591 -0.311 1.33 0.0426 6.77 30.67 97 -- --
35.37 0.277 12.5 0.56 1.17 0.678 -0.198 -- 0.0895 6.73 51.78 108 -- --
33.68 0.27 12.5 0.352 1.17 0.585 -- 1.26 0.0485 6.76 30.44 101 -- --
35.43 0.277 12.5 0.556 1.17 0.657 -- -- 0.0848 6.67 70.13 139 -- --
84.8 0.429 12.5 0.626 -- 1.64 -- 1.17 0.203 -- 34.16 362 -- --
39.71 0.295 12.5 0.419 1.3 -- 0.0416 -- -0.00597 6.27 -- -- -- --
39.71 0.295 12.5 0.42 1.3 -- -- -- -0.0061 6.27 -- -- -- --
85.63 0.431 12.5 0.804 -- 1.67 -- -- 0.254 -- 52.06 373 -- --
42.74 0.305 12.5 -- 1.23 0.383 -- -- -0.00868 6.47 171 137 -- --
127.7 0.528 12.5 0.455 -- -- -- -- 0.0222 -- -- -- -- --
44.36 0.312 12.5 -- 1.31 -- -- -- -0.0529 6.25 -- -- -- --
101.47 0.469 12.5 -- -- 1.4 -- -- 0.133 -- 57.62 369 -- --
133.16 0.539 12.6 -- -- -- -- -- -0.0283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.92 temperature 10.0 270 > th dose dependent rect. 22 19
2 30.23 temperature 15.0 90 > th dose dependent rect. 24 18
18 30.75 temperature 10.0 270 > th dose dependent rect. 6 11
19 30.76 wind 9.0 270 < th dose independent rect. 13 13
23 30.80 precipitation 0.1 270 < th dose independent rect. 12 14
24 30.80 precipitation 0.1 270 < th dose dependent rect. 12 14
34 30.99 atmosphere 1000.0 90 > th dose independent rect. 4 9
38 31.02 temperature 10.0 270 > th dose independent rect. 2 11
39 31.02 atmosphere 995.0 270 > th dose independent rect. 2 11
40 31.02 atmosphere 1015.0 270 < th dose independent rect. 2 11
41 31.02 precipitation 0.1 270 < th dose independent rect. 2 11
42 31.02 temperature 10.0 270 > th dose independent rect. 13 13
43 31.02 precipitation 0.1 270 < th dose dependent rect. 2 11
62 31.21 temperature 30.0 90 < th dose independent rect. 4 9
97 31.45 wind 9.0 270 < th dose independent rect. 2 10
98 31.45 humidity 50.0 270 > th dose independent rect. 2 10
126 31.70 atmosphere 995.0 90 > th dose dependent rect. 4 9
148 31.80 atmosphere 1015.0 90 < th dose independent rect. 13 15
151 31.81 radiation 40.0 90 < th dose independent rect. 13 15
158 31.85 atmosphere 995.0 90 > th dose independent rect. 13 15
159 31.86 wind 1.0 90 > th dose independent rect. 4 9
162 31.90 radiation 1.0 10 > th dose independent rect. 5 9
206 32.05 temperature 20.0 270 > th dose independent rect. 23 18
213 32.08 wind 7.0 270 < th dose independent rect. 22 19
222 32.12 precipitation 0.1 10 < th dose independent rect. 5 9
223 32.12 precipitation 0.1 10 < th dose dependent rect. 5 9
265 32.24 radiation 40.0 10 < th dose independent rect. 14 15
268 32.26 temperature 10.0 90 > th dose dependent rect. 13 15
299 32.34 temperature 10.0 1440 > th dose independent rect. 5 10
303 32.34 temperature 10.0 1440 > th dose independent rect. 15 14
328 32.44 atmosphere 995.0 1440 > th dose independent rect. 5 9
338 32.47 atmosphere 1000.0 270 > th dose independent rect. 17 5
343 32.49 atmosphere 1000.0 270 > th dose independent rect. 7 15
346 32.50 temperature 10.0 720 > th dose dependent rect. 6 3
347 32.50 temperature 30.0 90 < th dose dependent rect. 4 19
361 32.53 wind 7.0 270 < th dose independent rect. 21 21
365 32.54 atmosphere 1015.0 10 < th dose independent rect. 14 15
371 32.55 temperature 30.0 90 < th dose dependent rect. 17 20
381 32.57 temperature 30.0 270 < th dose dependent rect. 3 9
434 32.69 wind 1.0 270 > th dose independent rect. 7 14
435 32.69 temperature 30.0 270 < th dose independent rect. 7 15
465 32.73 atmosphere 1000.0 270 > th dose independent rect. 18 3
473 32.75 atmosphere 1015.0 90 < th dose dependent rect. 13 15
513 32.80 temperature 10.0 720 > th dose dependent rect. 21 13
521 32.82 radiation 10.0 270 < th dose independent rect. 16 6
524 32.82 radiation 20.0 270 < th dose dependent rect. 16 6
527 32.83 temperature 20.0 90 > th dose dependent rect. 13 23
529 32.84 radiation 10.0 270 < th dose dependent rect. 8 14
530 32.84 radiation 40.0 270 < th dose dependent rect. 17 18
534 32.85 temperature 30.0 270 < th dose independent rect. 4 18
541 32.86 temperature 15.0 270 > th dose independent rect. 17 5
582 32.91 humidity 50.0 10 > th dose independent rect. 14 15
590 32.92 temperature 10.0 10 > th dose dependent rect. 14 15
611 32.95 humidity 50.0 270 > th dose independent rect. 17 5
629 32.98 wind 7.0 270 < th dose independent rect. 21 10
640 32.99 wind 1.0 90 > th dose independent rect. 13 15
650 33.00 precipitation 0.1 270 < th dose independent rect. 21 21
654 33.00 precipitation 0.1 270 < th dose dependent rect. 21 21
659 33.01 precipitation 0.1 270 < th dose independent rect. 22 19
662 33.01 precipitation 0.1 270 < th dose dependent rect. 22 19
670 33.02 humidity 70.0 270 > th dose independent rect. 21 10
691 33.04 wind 1.0 270 > th dose independent rect. 17 5
706 33.05 atmosphere 1015.0 10 < th dose dependent rect. 14 15
711 33.06 radiation 20.0 270 < th dose independent rect. 21 10
723 33.09 wind 9.0 270 < th dose independent rect. 17 5
743 33.10 temperature 15.0 90 > th dose dependent rect. 6 23
745 33.11 temperature 10.0 270 > th dose independent rect. 21 10
746 33.11 temperature 30.0 270 < th dose independent rect. 21 10
747 33.11 humidity 50.0 270 > th dose independent rect. 21 10
749 33.11 atmosphere 995.0 270 > th dose independent rect. 21 10
751 33.11 temperature 10.0 270 > th dose independent rect. 7 14
753 33.11 temperature 10.0 270 > th dose dependent sin 2 NA
755 33.11 radiation 40.0 270 < th dose dependent rect. 21 10
789 33.15 temperature 30.0 270 < th dose independent rect. 17 5
793 33.15 precipitation 0.1 270 < th dose independent rect. 21 10
796 33.15 precipitation 0.1 270 < th dose dependent rect. 21 10
805 33.16 atmosphere 995.0 90 > th dose dependent rect. 4 19
809 33.17 temperature 15.0 270 > th dose independent rect. 6 11
823 33.19 radiation 1.0 270 > th dose independent sin 22 NA
851 33.21 atmosphere 995.0 270 > th dose dependent rect. 18 3
872 33.22 temperature 30.0 90 < th dose dependent rect. 3 23
877 33.23 atmosphere 1015.0 270 < th dose independent rect. 22 19
894 33.25 atmosphere 995.0 270 > th dose dependent rect. 17 5
933 33.27 temperature 30.0 270 < th dose independent rect. 3 20
942 33.28 radiation 20.0 270 < th dose independent sin 14 NA
963 33.30 temperature 15.0 270 > th dose independent rect. 18 3