Os05g0519000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0519000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : VQ domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.75 | 0.414 | 11.8 | 0.914 | 1.19 | -0.46 | 1.18 | 0.204 | 0.339 | 23.8 | 19.1 | 17 | -- | -- |
| 77.87 | 0.411 | 11.8 | 0.94 | 1.19 | -0.486 | 1.25 | -- | 0.345 | 23.9 | 19.13 | 14 | -- | -- |
| 82.93 | 0.424 | 11.8 | 0.813 | 1.19 | -0.456 | -- | 0.644 | 0.316 | 23.9 | 19.2 | 12 | -- | -- |
| 84.3 | 0.428 | 11.8 | 0.891 | 1.17 | -0.522 | -- | -- | 0.324 | 23.9 | 19 | 2 | -- | -- |
| 160.85 | 0.594 | 11.8 | 0.874 | -- | 0.13 | -- | 1.1 | 0.394 | -- | 20.7 | 10 | -- | -- |
| 84.74 | 0.432 | 11.8 | 1.09 | 1.1 | -- | 1.38 | -- | 0.415 | 23.8 | -- | -- | -- | -- |
| 92.96 | 0.452 | 11.8 | 1.03 | 1.09 | -- | -- | -- | 0.409 | 23.8 | -- | -- | -- | -- |
| 137.82 | 0.547 | 11.7 | 1.27 | -- | 0.593 | -- | -- | 0.658 | -- | 26.3 | 11 | -- | -- |
| 102.93 | 0.473 | 11.8 | -- | 1.23 | -0.676 | -- | -- | 0.222 | 24 | 19.3 | 2 | -- | -- |
| 167.98 | 0.606 | 11.7 | 1.06 | -- | -- | -- | -- | 0.423 | -- | -- | -- | -- | -- |
| 121.02 | 0.515 | 11.8 | -- | 1.1 | -- | -- | -- | 0.294 | 23.9 | -- | -- | -- | -- |
| 175.09 | 0.616 | 11.7 | -- | -- | 0.483 | -- | -- | 0.415 | -- | 26.4 | 11 | -- | -- |
| 197.85 | 0.657 | 11.8 | -- | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.03 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 2 | 76.08 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 3 | 76.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 17 | 15 |
| 5 | 76.38 | temperature | 20.0 | 10 | > th | dose independent | sin | 11 | NA |
| 7 | 76.39 | temperature | 20.0 | 90 | > th | dose independent | sin | 12 | NA |
| 9 | 76.56 | temperature | 20.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 17 | 76.63 | temperature | 20.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 24 | 76.78 | temperature | 20.0 | 10 | < th | dose independent | sin | 11 | NA |
| 25 | 76.81 | temperature | 20.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 31 | 76.83 | temperature | 20.0 | 10 | < th | dose independent | rect. | 13 | 17 |
| 32 | 76.84 | temperature | 20.0 | 90 | < th | dose independent | sin | 12 | NA |
| 33 | 76.84 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 44 | 76.88 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 58 | 76.99 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 12 |
| 59 | 77.00 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 14 |
| 67 | 77.05 | temperature | 20.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 96 | 77.24 | temperature | 20.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 109 | 77.30 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 112 | 77.31 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 114 | 77.33 | temperature | 20.0 | 10 | < th | dose independent | rect. | 20 | 12 |
| 130 | 77.37 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 14 |
| 182 | 77.50 | wind | 1.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 236 | 77.61 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 23 | 9 |
| 237 | 77.62 | wind | 1.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 279 | 77.72 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 301 | 77.76 | temperature | 20.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 355 | 77.89 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 385 | 77.95 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 419 | 78.01 | temperature | 20.0 | 10 | < th | dose independent | rect. | 22 | 20 |
| 500 | 78.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 22 |
| 501 | 78.16 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 23 |
| 517 | 78.19 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 9 |
| 556 | 78.30 | temperature | 20.0 | 90 | > th | dose independent | rect. | 24 | 23 |
| 577 | 78.33 | temperature | 20.0 | 30 | < th | dose independent | rect. | 9 | 21 |
| 598 | 78.35 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 23 |
| 608 | 78.36 | temperature | 20.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 610 | 78.36 | temperature | 20.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 611 | 78.37 | temperature | 20.0 | 10 | < th | dose independent | no | NA | NA |
| 640 | 78.40 | temperature | 20.0 | 10 | < th | dose independent | rect. | 15 | 23 |
| 645 | 78.41 | temperature | 20.0 | 10 | > th | dose independent | no | NA | NA |
| 662 | 78.43 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 674 | 78.45 | temperature | 20.0 | 10 | < th | dose independent | rect. | 5 | 23 |
| 681 | 78.47 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 695 | 78.50 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 7 |
| 737 | 78.55 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 744 | 78.55 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 786 | 78.62 | temperature | 20.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 842 | 78.70 | wind | 3.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 852 | 78.72 | temperature | 20.0 | 90 | > th | dose independent | rect. | 1 | 7 |
| 872 | 78.74 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 7 |
| 924 | 78.80 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 23 |
| 929 | 78.81 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 934 | 78.81 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 947 | 78.83 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 8 |
| 974 | 78.86 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 983 | 78.86 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 5 |