BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0740600 Os01g0740600|AK062281
         (87 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0740600  Transferrin receptor-like dimerisation region ...   157   1e-39
Os01g0743300  Protease-associated PA domain containing protein    101   1e-22
Os01g0740500  Protease-associated PA domain containing protein     98   1e-21

>Os01g0740600 Transferrin receptor-like dimerisation region domain containing
          protein
          Length = 87

 Score =  157 bits (398), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/87 (86%), Positives = 75/87 (86%)

Query: 1  INDRLMMAERGFINREGLDGRPWYKHMIYASSDQDDWGTKAFPGIVSAIDKANKLNTTES 60
          INDRLMMAERGFINREGLDGRPWYKHMIYASSDQDDWGTKAFPGIVSAIDKANKLNTTES
Sbjct: 1  INDRLMMAERGFINREGLDGRPWYKHMIYASSDQDDWGTKAFPGIVSAIDKANKLNTTES 60

Query: 61 WQLLQHEIYXXXXXXXXXXXXLDGRLT 87
          WQLLQHEIY            LDGRLT
Sbjct: 61 WQLLQHEIYRAARAVSKASAVLDGRLT 87



>Os01g0743300 Protease-associated PA domain containing protein
          Length = 728

 Score =  101 bits (251), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 57/87 (65%)

Query: 1   INDRLMMAERGFINREGLDGRPWYKHMIYASSDQDDWGTKAFPGIVSAIDKANKLNTTES 60
           +N+RLMM ER F +REGL GRPWYKH+IYA S  DD+G + +PG+  AI  A + NT+ES
Sbjct: 642 LNERLMMTERAFTDREGLSGRPWYKHLIYAPSLHDDYGAQVYPGVDDAIQMAERTNTSES 701

Query: 61  WQLLQHEIYXXXXXXXXXXXXLDGRLT 87
           W+ +QHEIY            L G LT
Sbjct: 702 WRSVQHEIYRIARVINQASLVLSGGLT 728



>Os01g0740500 Protease-associated PA domain containing protein
          Length = 713

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 57/87 (65%)

Query: 1   INDRLMMAERGFINREGLDGRPWYKHMIYASSDQDDWGTKAFPGIVSAIDKANKLNTTES 60
           +NDRLM AER F NREGL  R W+KH++Y  S+Q+DW + ++PG+ +AI  A K NTTES
Sbjct: 627 LNDRLMQAERAFTNREGLFKREWFKHLVYGPSEQNDWESASYPGVENAIASARKENTTES 686

Query: 61  WQLLQHEIYXXXXXXXXXXXXLDGRLT 87
           W+ +QHEI+            L G LT
Sbjct: 687 WKFVQHEIHRVARAITQASVVLAGSLT 713



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,459,973
Number of extensions: 77466
Number of successful extensions: 109
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 4
Length of query: 87
Length of database: 17,035,801
Length adjustment: 57
Effective length of query: 30
Effective length of database: 14,059,603
Effective search space: 421788090
Effective search space used: 421788090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)