Os01g0740600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0740600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferrin receptor-like dimerisation region domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	10.9	(0.0267)	R²	:	0.777
β₁	:	2.93	(0.0977)	R²_dD	:	0.455	R²_D	:	0.278
β₂	:	1.57	(0.0658)	R²_dC	:	0.28	R²_C	:	0.201
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	1.07	(0.057)	R²_dN8	:	0.23	R²_N8	:	0.0589
σ	:	0.502
deviance	:	114.73
__

_____

C
peak time of C	:	14.7
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
92.37	0.452	11.1	1.85	1.69	0.822	-0.964	-2.98	0.57	14.8	25.1	1334	--	--
102.13	0.471	11	2.67	1.59	0.634	-0.832	--	0.791	14.8	24.5	1547	--	--
94.77	0.453	11.1	1.8	1.62	0.803	--	-3.07	0.556	14.7	25.55	1451	--	--
103.17	0.473	11	2.74	1.67	0.567	--	--	0.856	14.7	24.4	1265	--	--
183.71	0.635	11	2.47	--	0.877	--	-0.828	0.609	--	25.55	1451	--	--
113.03	0.498	10.9	2.94	1.58	--	-0.706	--	1.07	14.8	--	--	--	--
114.73	0.502	10.9	2.93	1.57	--	--	--	1.07	14.7	--	--	--	--
170.85	0.611	11	2.66	--	0.919	--	--	0.766	--	25.7	1731	--	--
117.05	0.504	11.1	--	1.6	2.34	--	--	0.166	14.7	18.68	47520	--	--
258.8	0.752	10.9	2.86	--	--	--	--	1.03	--	--	--	--	--
340.31	0.863	11	--	1.52	--	--	--	0.741	14.7	--	--	--	--
266.95	0.761	11.1	--	--	2.27	--	--	0.158	--	18.58	47520	--	--
474.33	1.02	11	--	--	--	--	--	0.71	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	87.83	precipitation	0.1	270	> th	dose dependent	rect.	2	2
2	87.86	precipitation	0.1	270	> th	dose independent	rect.	2	2
3	89.28	radiation	1.0	14400	< th	dose independent	rect.	8	5
4	89.32	radiation	1.0	14400	> th	dose independent	rect.	8	5
12	90.81	radiation	1.0	14400	> th	dose independent	rect.	8	2
13	90.86	radiation	40.0	14400	< th	dose dependent	rect.	24	5
15	90.87	radiation	1.0	14400	< th	dose dependent	rect.	8	6
16	90.88	radiation	1.0	14400	< th	dose dependent	rect.	9	4
21	91.06	radiation	40.0	14400	< th	dose dependent	rect.	20	9
27	91.23	radiation	1.0	43200	< th	dose independent	rect.	20	9
33	91.32	radiation	10.0	43200	< th	dose independent	rect.	22	7
40	91.40	radiation	10.0	43200	< th	dose independent	rect.	24	5
49	91.47	radiation	1.0	43200	> th	dose independent	rect.	4	1
59	91.47	radiation	1.0	43200	> th	dose dependent	rect.	4	1
69	91.51	radiation	1.0	1440	< th	dose independent	rect.	11	1
70	91.51	radiation	1.0	1440	< th	dose dependent	rect.	11	1
71	91.56	radiation	1.0	14400	< th	dose dependent	rect.	9	1
74	91.58	radiation	10.0	43200	< th	dose independent	rect.	3	2
91	91.83	precipitation	0.1	270	> th	dose dependent	rect.	24	4
98	91.89	precipitation	0.1	270	> th	dose independent	rect.	24	4
100	91.92	temperature	25.0	1440	> th	dose independent	rect.	9	18
103	91.96	temperature	25.0	1440	> th	dose independent	rect.	9	20
113	92.12	temperature	25.0	1440	< th	dose independent	rect.	9	18
123	92.18	temperature	25.0	1440	< th	dose independent	rect.	9	20
163	92.28	radiation	10.0	43200	< th	dose dependent	rect.	5	1
168	92.29	radiation	30.0	14400	< th	dose independent	rect.	24	7
169	92.29	radiation	30.0	43200	< th	dose dependent	rect.	5	1
195	92.39	temperature	25.0	1440	> th	dose independent	rect.	20	20
199	92.41	humidity	90.0	43200	> th	dose dependent	rect.	23	1
200	92.42	temperature	25.0	1440	> th	dose independent	rect.	21	18
254	92.61	temperature	25.0	1440	< th	dose independent	rect.	21	22
255	92.61	temperature	25.0	1440	> th	dose independent	rect.	17	23
289	92.69	temperature	25.0	1440	< th	dose independent	rect.	21	18
290	92.69	temperature	25.0	1440	> th	dose independent	rect.	4	23
297	92.70	radiation	40.0	43200	> th	dose dependent	rect.	7	2
330	92.75	temperature	25.0	1440	> th	dose independent	no	NA	NA
336	92.75	humidity	90.0	43200	> th	dose dependent	rect.	20	8
345	92.78	temperature	25.0	1440	< th	dose independent	rect.	17	23
357	92.81	temperature	25.0	1440	> th	dose independent	rect.	13	23
358	92.81	temperature	25.0	1440	< th	dose independent	rect.	4	23
374	92.86	radiation	10.0	43200	< th	dose independent	rect.	18	8
382	92.88	temperature	25.0	1440	< th	dose independent	no	NA	NA
386	92.88	temperature	25.0	1440	< th	dose independent	rect.	13	14
392	92.89	radiation	1.0	43200	> th	dose dependent	rect.	18	13
399	92.91	wind	7.0	43200	< th	dose independent	rect.	16	2
425	92.93	radiation	20.0	43200	< th	dose independent	rect.	6	1
427	92.93	radiation	10.0	43200	< th	dose independent	rect.	18	5
433	92.93	radiation	40.0	43200	< th	dose independent	rect.	16	17
435	92.94	radiation	40.0	43200	< th	dose independent	rect.	24	9
438	92.94	temperature	25.0	1440	< th	dose independent	rect.	13	23
449	92.96	radiation	40.0	43200	< th	dose independent	rect.	7	2
461	92.97	wind	7.0	43200	> th	dose independent	rect.	14	1
471	92.98	radiation	10.0	43200	< th	dose independent	rect.	18	3
480	92.99	radiation	20.0	43200	< th	dose independent	rect.	18	13
485	93.00	temperature	25.0	1440	> th	dose independent	sin	16	NA
486	93.00	wind	7.0	43200	< th	dose independent	rect.	14	1
491	93.00	radiation	1.0	1440	< th	dose dependent	rect.	8	8
502	93.02	wind	7.0	43200	> th	dose dependent	rect.	14	1
510	93.03	radiation	10.0	43200	< th	dose independent	rect.	18	1
525	93.04	temperature	25.0	1440	< th	dose independent	sin	16	NA
580	93.07	precipitation	0.1	14400	< th	dose independent	rect.	1	5
586	93.07	precipitation	0.1	14400	< th	dose dependent	rect.	1	5
593	93.09	wind	7.0	43200	> th	dose independent	rect.	16	1
605	93.12	wind	7.0	43200	> th	dose independent	rect.	13	5
629	93.15	radiation	1.0	1440	< th	dose dependent	rect.	14	2
648	93.18	humidity	90.0	43200	< th	dose independent	rect.	23	1
653	93.19	precipitation	0.1	14400	> th	dose independent	rect.	1	5
690	93.25	wind	7.0	43200	< th	dose independent	rect.	13	5
720	93.32	radiation	1.0	1440	< th	dose independent	rect.	14	1
735	93.37	radiation	40.0	43200	< th	dose independent	rect.	15	11
743	93.38	radiation	40.0	43200	< th	dose independent	rect.	15	15
750	93.40	radiation	40.0	43200	< th	dose independent	rect.	15	8
760	93.42	radiation	40.0	43200	< th	dose independent	rect.	15	2
764	93.42	radiation	40.0	43200	< th	dose independent	rect.	15	6
774	93.44	radiation	1.0	1440	< th	dose independent	rect.	8	7
786	93.45	precipitation	0.1	14400	> th	dose dependent	rect.	1	5
843	93.54	temperature	25.0	90	> th	dose independent	rect.	23	19
853	93.55	humidity	90.0	43200	> th	dose dependent	rect.	1	1
866	93.57	radiation	1.0	1440	> th	dose independent	rect.	14	1
907	93.63	temperature	15.0	43200	> th	dose independent	rect.	10	1
915	93.64	humidity	90.0	43200	> th	dose independent	rect.	23	1
919	93.64	radiation	1.0	1440	> th	dose independent	rect.	8	7
920	93.65	temperature	15.0	43200	< th	dose independent	rect.	10	1
925	93.67	radiation	30.0	43200	> th	dose independent	rect.	7	1
947	93.69	radiation	40.0	43200	< th	dose independent	sin	13	NA
962	93.72	radiation	10.0	43200	< th	dose independent	sin	11	NA