BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0740600 Os01g0740600|AK062281
         (87 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19740.1  | chr5:6673986-6676767 FORWARD LENGTH=682             99   4e-22
AT3G54720.1  | chr3:20254852-20257815 REVERSE LENGTH=706           63   3e-11

>AT5G19740.1 | chr5:6673986-6676767 FORWARD LENGTH=682
          Length = 681

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/86 (51%), Positives = 56/86 (65%)

Query: 1   INDRLMMAERGFINREGLDGRPWYKHMIYASSDQDDWGTKAFPGIVSAIDKANKLNTTES 60
           +NDRLMMAER   +R+GL  RPWYKH+IY  S  DD+G+K+FPG+  AID A KLNT  S
Sbjct: 595 LNDRLMMAERALTDRDGLSERPWYKHLIYGPSKYDDYGSKSFPGVDDAIDNAKKLNTKAS 654

Query: 61  WQLLQHEIYXXXXXXXXXXXXLDGRL 86
           W+ +QH+I+            L G L
Sbjct: 655 WENVQHQIWRVSRAIRHASLVLKGEL 680



>AT3G54720.1 | chr3:20254852-20257815 REVERSE LENGTH=706
          Length = 705

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 1   INDRLMMAERGFINREGLDGRPWYKHMIYASSDQDDWGTKAFPGIVSAIDKANKLNTTES 60
           +NDRLM+ ERGF++ EG+ G+ W+KH++Y  + + +     FPGI  AI     +N +E 
Sbjct: 625 LNDRLMLVERGFLDAEGIKGKEWFKHLVYGPAAEPESKLGFFPGIADAI----AMNASEG 680

Query: 61  WQLLQHEIYXXXXXXXXXXXXLDGRLT 87
             +++HEI+            L G  T
Sbjct: 681 --IIEHEIWRVARAIQRASKALKGGFT 705



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,564,286
Number of extensions: 48874
Number of successful extensions: 92
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)