BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0738500 Os01g0738500|J090027I22
         (66 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0738500  Conserved hypothetical protein                      137   2e-33
Os01g0531200  Copper amine oxidase family protein                 129   4e-31
Os02g0592600  Copper amine oxidase family protein                 124   1e-29

>Os01g0738500 Conserved hypothetical protein
          Length = 66

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/66 (100%), Positives = 66/66 (100%)

Query: 1  VDKLHGMVKKAKMAMTSTADTTKQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAA 60
          VDKLHGMVKKAKMAMTSTADTTKQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAA
Sbjct: 1  VDKLHGMVKKAKMAMTSTADTTKQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAA 60

Query: 61 AQDYFC 66
          AQDYFC
Sbjct: 61 AQDYFC 66



>Os01g0531200 Copper amine oxidase family protein
          Length = 684

 Score =  129 bits (325), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 62/63 (98%)

Query: 1   VDKLHGMVKKAKMAMTSTADTTKQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAA 60
           VDKLHGMVKKAKMAMTSTADTT QALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAA
Sbjct: 521 VDKLHGMVKKAKMAMTSTADTTTQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAA 580

Query: 61  AQD 63
           AQD
Sbjct: 581 AQD 583



>Os02g0592600 Copper amine oxidase family protein
          Length = 766

 Score =  124 bits (311), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/63 (93%), Positives = 60/63 (95%)

Query: 1   VDKLHGMVKKAKMAMTSTADTTKQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAA 60
           VDKLHGMVKKAK+AM STADTT QALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAA
Sbjct: 524 VDKLHGMVKKAKIAMASTADTTTQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAA 583

Query: 61  AQD 63
            QD
Sbjct: 584 TQD 586



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,101,902
Number of extensions: 58800
Number of successful extensions: 129
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 66
Length of database: 17,035,801
Length adjustment: 38
Effective length of query: 28
Effective length of database: 15,051,669
Effective search space: 421446732
Effective search space used: 421446732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)