Os02g0592600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Copper amine oxidase family protein.
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Os02g0592600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Copper amine oxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.11 | 0.456 | 6.11 | 1.17 | 0.669 | -2.02 | -0.137 | 2.04 | 0.634 | 20.8 | 19.8 | 418 | -- | -- |
| 96.32 | 0.457 | 6.16 | 0.814 | 0.646 | -1.96 | 0.167 | -- | 0.519 | 21.1 | 18.5 | 435 | -- | -- |
| 94.13 | 0.452 | 6.11 | 1.14 | 0.673 | -2.02 | -- | 1.88 | 0.627 | 20.9 | 19.62 | 428 | -- | -- |
| 96.34 | 0.457 | 6.16 | 0.801 | 0.656 | -1.99 | -- | -- | 0.525 | 21.1 | 18.22 | 437 | -- | -- |
| 107.26 | 0.482 | 6.13 | 1.03 | -- | -1.73 | -- | 1.88 | 0.523 | -- | 19.37 | 167 | -- | -- |
| 158.75 | 0.591 | 6.22 | 0.315 | 0.523 | -- | 0.276 | -- | 0.182 | 1.82 | -- | -- | -- | -- |
| 159.04 | 0.591 | 6.22 | 0.306 | 0.522 | -- | -- | -- | 0.18 | 1.75 | -- | -- | -- | -- |
| 108.32 | 0.485 | 6.15 | 0.706 | -- | -1.77 | -- | -- | 0.469 | -- | 18.6 | 106 | -- | -- |
| 111.02 | 0.491 | 6.18 | -- | 0.603 | -1.66 | -- | -- | 0.401 | 21.5 | 19.39 | 422 | -- | -- |
| 175.62 | 0.619 | 6.21 | 0.328 | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
| 161.52 | 0.594 | 6.23 | -- | 0.528 | -- | -- | -- | 0.146 | 1.77 | -- | -- | -- | -- |
| 120.37 | 0.511 | 6.17 | -- | -- | -1.55 | -- | -- | 0.368 | -- | 19.43 | 107 | -- | -- |
| 178.45 | 0.624 | 6.22 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 13 | 93.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 20 | 93.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 21 | 93.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 57 | 95.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 86 | 96.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 87 | 96.37 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 90 | 96.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 99 | 96.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 107 | 96.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 113 | 96.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 115 | 96.78 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 138 | 96.99 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 206 | 97.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 289 | 97.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 299 | 97.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 21 |
| 355 | 97.97 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 777 | 99.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 782 | 99.32 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 851 | 99.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 909 | 99.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 944 | 100.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 959 | 100.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 6 |