BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0738100 Os01g0738100|J065211B15
(166 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0738100 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 269 9e-73
AK064546 241 2e-64
Os06g0487900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 92 2e-19
>Os01g0738100 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 166
Score = 269 bits (687), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 131/166 (78%), Positives = 131/166 (78%)
Query: 1 MPAVHFSCCXXXXXXXXXXXXXXXXHEFHCSFLIAEWQHLQNDSSYTIPFSGRIWNHLSK 60
MPAVHFSCC HEFHCSFLIAEWQHLQNDSSYTIPFSGRIWNHLSK
Sbjct: 1 MPAVHFSCCYFVVLSFLLLTYFSLLHEFHCSFLIAEWQHLQNDSSYTIPFSGRIWNHLSK 60
Query: 61 NINKEKVQVPSQRNKYDCGIFMLHYIERFIQEAPERLTRENLCMFGRKWFDPKETSGLRD 120
NINKEKVQVPSQRNKYDCGIFMLHYIERFIQEAPERLTRENLCMFGRKWFDPKETSGLRD
Sbjct: 61 NINKEKVQVPSQRNKYDCGIFMLHYIERFIQEAPERLTRENLCMFGRKWFDPKETSGLRD 120
Query: 121 RIRALMFDAFESARMXXXXXXXXXXXXXXXXXXXKDRDGVMVVVID 166
RIRALMFDAFESARM KDRDGVMVVVID
Sbjct: 121 RIRALMFDAFESARMDDESSQSESHSDDQSGDEDKDRDGVMVVVID 166
>AK064546
Length = 312
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/136 (86%), Positives = 117/136 (86%)
Query: 31 SFLIAEWQHLQNDSSYTIPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYIERFI 90
SFLIAEWQHLQNDSSYTIPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYIERFI
Sbjct: 177 SFLIAEWQHLQNDSSYTIPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYIERFI 236
Query: 91 QEAPERLTRENLCMFGRKWFDPKETSGLRDRIRALMFDAFESARMXXXXXXXXXXXXXXX 150
QEAPERLTRENLCMFGRKWFDPKETSGLRDRIRALMFDAFESARM
Sbjct: 237 QEAPERLTRENLCMFGRKWFDPKETSGLRDRIRALMFDAFESARMDDESSQSESHSDDQS 296
Query: 151 XXXXKDRDGVMVVVID 166
KDRDGVMVVVID
Sbjct: 297 GDEDKDRDGVMVVVID 312
>Os06g0487900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 522
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 32 FLIAEWQHLQNDSSYT-IPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYIERFI 90
FL EW +L S +W +L + I K+ V VP Q N+YDCG+F+L+Y+ RFI
Sbjct: 376 FLKEEWNYLNKTGSLEDCHLHESVWKNLPRKIKKKAVTVPQQDNEYDCGVFVLYYMRRFI 435
Query: 91 QEAPERL-TRENLCMFGRKWFDPKETSGLRDRIRALMFDAFESAR 134
+EAPERL +++ MFG WF +E S LR ++AL+ FE A+
Sbjct: 436 EEAPERLNNKDSSNMFGEGWFQREEASALRKEMQALLLRLFEEAK 480
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,363,690
Number of extensions: 145188
Number of successful extensions: 376
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)