BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0731100 Os01g0731100|AK109409
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0731100 Similar to Pathogen-related protein 512 e-146
Os01g0248300 Conserved hypothetical protein 242 3e-64
Os01g0248500 Similar to Pathogen-related protein 240 8e-64
AK107594 145 3e-35
>Os01g0731100 Similar to Pathogen-related protein
Length = 266
Score = 512 bits (1319), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/266 (95%), Positives = 253/266 (95%)
Query: 1 MEVAAADSSGGDRYRSHLTGDGEKNTVWRHGAPPTYDAVNSLFEAERTQEWPAGSLEETV 60
MEVAAADSSGGDRYRSHLTGDGEKNTVWRHGAPPTYDAVNSLFEAERTQEWPAGSLEETV
Sbjct: 1 MEVAAADSSGGDRYRSHLTGDGEKNTVWRHGAPPTYDAVNSLFEAERTQEWPAGSLEETV 60
Query: 61 QNAIKTWEMELSYKAKLEDFKSVSPGRFRLSVNGGRPLTGEETLAVGSYNALLTSPILPG 120
QNAIKTWEMELSYKAKLEDFKSVSPGRFRLSVNGGRPLTGEETLAVGSYNALLTSPILPG
Sbjct: 61 QNAIKTWEMELSYKAKLEDFKSVSPGRFRLSVNGGRPLTGEETLAVGSYNALLTSPILPG 120
Query: 121 AGAYDAAAETFESSHDLFRAAFPRGFAWEVIRVYSGPPVITFKFRHWGHMDGPYKGHAPT 180
AGAYDAAAETFESSHDLFRAAFPRGFAWEVIRVYSGPPVITFKFRHWGHMDGPYKGHAPT
Sbjct: 121 AGAYDAAAETFESSHDLFRAAFPRGFAWEVIRVYSGPPVITFKFRHWGHMDGPYKGHAPT 180
Query: 181 GDKVEFYGVAVLKVDEQLRAEDVEVYYDPXXXXXXXXXXXXXVPSAEEEDARQLGERLGE 240
GDKVEFYGVAVLKVDEQLRAEDVEVYYDP VPSAEEEDARQLGERLGE
Sbjct: 181 GDKVEFYGVAVLKVDEQLRAEDVEVYYDPGELLGGLLKGPLLVPSAEEEDARQLGERLGE 240
Query: 241 AAIVSASGAAPQSQACPFLASAKREE 266
AAIVSASGAAPQSQACPFLASAKREE
Sbjct: 241 AAIVSASGAAPQSQACPFLASAKREE 266
>Os01g0248300 Conserved hypothetical protein
Length = 240
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 141/201 (70%)
Query: 8 SSGGDRYRSHLTGDGEKNTVWRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQNAIKTW 67
S GGD+YRS + G+GEK+TVWR G+PP YD VN LFE ERT+EWP GSLEE VQ +KTW
Sbjct: 9 SGGGDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQRLLKTW 68
Query: 68 EMELSYKAKLEDFKSVSPGRFRLSVNGGRPLTGEETLAVGSYNALLTSPILPGAGAYDAA 127
EMEL +K + ED KSV +F S NG R L ++ +A+GSYNA L + + P YD
Sbjct: 69 EMELVHKVRPEDQKSVHSQKFCSSTNGMRFLNRKDLMAIGSYNAFLQTKLPPEHRIYDPD 128
Query: 128 AETFESSHDLFRAAFPRGFAWEVIRVYSGPPVITFKFRHWGHMDGPYKGHAPTGDKVEFY 187
ET ES F AFPRGFA EV+ VYSGPP I FKFRHWGHM+GP+ H P G++VEF+
Sbjct: 129 KETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGHMEGPFMEHPPHGERVEFF 188
Query: 188 GVAVLKVDEQLRAEDVEVYYD 208
G+ + VDE+++ E E +Y+
Sbjct: 189 GICIFHVDEEMKVEKAEFFYE 209
>Os01g0248500 Similar to Pathogen-related protein
Length = 240
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 114/206 (55%), Positives = 145/206 (70%), Gaps = 1/206 (0%)
Query: 4 AAADSSGG-DRYRSHLTGDGEKNTVWRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQN 62
AA ++SGG D+YRS + G+GEK+TVWR G+PP YD VN LFE ERT+EWP GSLEE VQ
Sbjct: 3 AAGEASGGRDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQR 62
Query: 63 AIKTWEMELSYKAKLEDFKSVSPGRFRLSVNGGRPLTGEETLAVGSYNALLTSPILPGAG 122
+KTWEMEL +K + ED KSV +F S NG R L+ +E +A+G YNA L + + P
Sbjct: 63 LLKTWEMELIHKVRPEDQKSVHSQKFCASTNGMRFLSRKEVMAIGGYNAFLQTKLPPEHR 122
Query: 123 AYDAAAETFESSHDLFRAAFPRGFAWEVIRVYSGPPVITFKFRHWGHMDGPYKGHAPTGD 182
YD ET ES F AFPRGFA EV+ VYSGPP I FKFRHWG+M+GP+K H P G
Sbjct: 123 IYDPDNETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGYMEGPFKEHPPHGK 182
Query: 183 KVEFYGVAVLKVDEQLRAEDVEVYYD 208
+VEF+G+ + VDE+++ E E +Y+
Sbjct: 183 RVEFFGICIFHVDEEMKVEKTEYFYE 208
>AK107594
Length = 451
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 108/197 (54%), Gaps = 15/197 (7%)
Query: 22 GEKNTVWRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQNAIKTWEMELSYKAKLEDFK 81
G++ WR+G P Y ++E + AGSL + V+N +K WE+E S+K +LED++
Sbjct: 30 GDEGVKWRYGRAPDYSKTRKVWEEGKKMNHAAGSLPQLVENLVKNWEVEASFKPRLEDWR 89
Query: 82 SVSPGRFRLSVNGGRPLTGEETLAVGSYNALLTSPILPGAGAYDAAAETFESSHDLFRAA 141
++ + ++NGG P T E L VG+YNA++ Y F SSH F+
Sbjct: 90 TIDHANYTFAINGGPPQTAEHMLKVGTYNAIIAPNEF-----YSPENSDFASSHKTFKRM 144
Query: 142 FPRGFAWEVIRVYSGPPVITFKFRHWGHMDGPYKGHAPTGDKV---------EFYGVAVL 192
P FAWEV+ VYSGPP + FK+RHWG M Y G G+KV + GV V
Sbjct: 145 MPT-FAWEVLEVYSGPPTVAFKWRHWGTMKNDYVGFNDKGEKVTAKAHGGPIDIQGVTVA 203
Query: 193 KVDEQLRAEDVEVYYDP 209
VD+++R + V+ ++DP
Sbjct: 204 TVDDKVRLQAVDTWFDP 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,021,134
Number of extensions: 435126
Number of successful extensions: 667
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 4
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)