Os01g0731100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pathogen-related protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0731100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Pathogen-related protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 737.01 | 1.28 | 9.67 | 1.93 | 5.23 | -2.28 | -0.473 | 4.28 | 0.0394 | 2.95 | 20.16 | 1385 | -- | -- |
| 772.9 | 1.29 | 9.8 | 1.17 | 5.27 | -2.02 | -0.0684 | -- | -0.293 | 2.9 | 20.41 | 1352 | -- | -- |
| 737.62 | 1.26 | 9.67 | 1.94 | 5.23 | -2.28 | -- | 4.18 | 0.0376 | 2.95 | 20.06 | 1384 | -- | -- |
| 771.88 | 1.29 | 9.8 | 1.2 | 5.27 | -2.03 | -- | -- | -0.28 | 2.91 | 20.05 | 1356 | -- | -- |
| 1699.39 | 1.92 | 10.1 | 1.77 | -- | -4.15 | -- | 2.1 | -0.73 | -- | 39.8 | 468 | -- | -- |
| 931.35 | 1.43 | 9.93 | 0.543 | 5 | -- | -0.472 | -- | -0.88 | 3.07 | -- | -- | -- | -- |
| 932.09 | 1.43 | 9.93 | 0.553 | 5 | -- | -- | -- | -0.877 | 3.07 | -- | -- | -- | -- |
| 915.24 | 1.41 | 9.99 | 0.901 | -- | -4.25 | -- | -- | -0.847 | -- | 1.77 | 406 | -- | -- |
| 792.04 | 1.31 | 9.83 | -- | 5.23 | -1.97 | -- | -- | -0.396 | 2.83 | 17.33 | 1319 | -- | -- |
| 2360.37 | 2.27 | 9.92 | 0.766 | -- | -- | -- | -- | -0.747 | -- | -- | -- | -- | -- |
| 940.14 | 1.43 | 9.95 | -- | 5.01 | -- | -- | -- | -0.938 | 3.07 | -- | -- | -- | -- |
| 918.08 | 1.41 | 9.89 | -- | -- | -4.54 | -- | -- | -0.693 | -- | 2.09 | 413 | -- | -- |
| 2375.84 | 2.28 | 9.94 | -- | -- | -- | -- | -- | -0.832 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 732.57 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 3 | 734.56 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 6 | 736.56 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 8 | 737.19 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 10 | 737.68 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 16 | 738.90 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 34 | 739.89 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 36 | 740.22 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 37 | 740.66 | radiation | 40 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 38 | 741.08 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 39 | 741.12 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 40 | 741.39 | humidity | 70 | 1440 | < th | dose independent | sin | 1 | NA |
| 43 | 741.85 | humidity | 70 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 55 | 741.85 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 70 | 741.93 | radiation | 20 | 1440 | > th | dose independent | no | NA | NA |
| 168 | 742.38 | radiation | 20 | 1440 | > th | dose independent | sin | 1 | NA |
| 185 | 743.06 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 186 | 743.06 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 242 | 743.12 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 284 | 743.77 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 286 | 743.81 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 291 | 744.17 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 320 | 745.28 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 352 | 746.16 | radiation | 10 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 395 | 747.04 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 396 | 747.04 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 397 | 747.05 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 422 | 747.22 | radiation | 40 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 431 | 747.29 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 434 | 747.30 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 453 | 747.41 | radiation | 40 | 1440 | > th | dose independent | sin | 13 | NA |
| 501 | 747.96 | humidity | 70 | 1440 | > th | dose independent | sin | 0 | NA |
| 509 | 748.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 575 | 749.20 | humidity | 80 | 1440 | < th | dose dependent | sin | 3 | NA |
| 577 | 749.41 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 578 | 749.41 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 579 | 749.44 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 580 | 749.45 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 599 | 749.83 | radiation | 40 | 1440 | > th | dose independent | sin | 15 | NA |
| 613 | 749.86 | radiation | 1 | 1440 | > th | dose dependent | sin | 22 | NA |
| 626 | 750.04 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 632 | 750.19 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 635 | 750.23 | radiation | 40 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 658 | 750.35 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 665 | 750.42 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 674 | 750.54 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 681 | 750.65 | radiation | 40 | 1440 | < th | dose dependent | sin | 22 | NA |
| 692 | 750.81 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 729 | 751.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 731 | 751.10 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 732 | 751.10 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 749 | 751.15 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 18 |
| 751 | 751.16 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 10 |
| 792 | 751.51 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 847 | 751.87 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 856 | 751.96 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 891 | 752.12 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 896 | 752.15 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 900 | 752.16 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 910 | 752.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 949 | 752.30 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |