BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0731100 Os01g0731100|AK109409
         (266 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78780.2  | chr1:29621447-29622431 REVERSE LENGTH=239          254   4e-68

>AT1G78780.2 | chr1:29621447-29622431 REVERSE LENGTH=239
          Length = 238

 Score =  254 bits (649), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 151/198 (76%), Gaps = 2/198 (1%)

Query: 12  DRYRSHLTGDGEKNTVWRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQNAIKTWEMEL 71
           D+YRS L   G+    WR+  PP +++VN LFE  +T+ WP GSLEETVQNAIK+WEME 
Sbjct: 8   DKYRSVLEDAGQ--VQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEMEF 65

Query: 72  SYKAKLEDFKSVSPGRFRLSVNGGRPLTGEETLAVGSYNALLTSPILPGAGAYDAAAETF 131
           S+K +L+DFK+++P +F+L VNG   L+ EETL +GSYNALL + +      Y    E+F
Sbjct: 66  SHKIRLQDFKTINPEKFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEEESF 125

Query: 132 ESSHDLFRAAFPRGFAWEVIRVYSGPPVITFKFRHWGHMDGPYKGHAPTGDKVEFYGVAV 191
           ESSHD FR+A PRGFAWE++ VYSGPPVI FKFRHWG+ +G +KGHAPTG+ V+F G+ V
Sbjct: 126 ESSHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLGV 185

Query: 192 LKVDEQLRAEDVEVYYDP 209
           LKVDE LRAE++E+YYDP
Sbjct: 186 LKVDESLRAEEIEIYYDP 203



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,828,090
Number of extensions: 238635
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)