Os01g0248500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pathogen-related protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0248500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Pathogen-related protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.45 | 0.563 | 8.16 | 0.823 | 0.77 | 1.11 | -0.61 | 4.18 | -0.0475 | 22.4 | 29.56 | 10 | -- | -- |
| 162.83 | 0.599 | 8.08 | 1.55 | 0.795 | 1.26 | 0.513 | -- | 0.0992 | 22.8 | 44.71 | 4 | -- | -- |
| 144.75 | 0.56 | 8.16 | 0.882 | 0.785 | 1.07 | -- | 3.86 | -0.0599 | 22.4 | 29.65 | 10 | -- | -- |
| 163.76 | 0.596 | 8.08 | 1.54 | 0.794 | 1.31 | -- | -- | 0.108 | 22.5 | 41.85 | 13 | -- | -- |
| 176.57 | 0.619 | 8.11 | 1.03 | -- | 1.57 | -- | 3.77 | 0.0606 | -- | 29.7 | 2 | -- | -- |
| 177.81 | 0.625 | 8.12 | 1.31 | 1.04 | -- | 0.754 | -- | -0.0747 | 23.8 | -- | -- | -- | -- |
| 180.21 | 0.629 | 8.12 | 1.29 | 1.04 | -- | -- | -- | -0.0771 | 23.7 | -- | -- | -- | -- |
| 196.9 | 0.654 | 8.04 | 1.66 | -- | 1.89 | -- | -- | 0.188 | -- | 35.66 | 2 | -- | -- |
| 220.36 | 0.695 | 8.14 | -- | 0.934 | 0.573 | -- | -- | -0.153 | 23.4 | 86.86 | 5 | -- | -- |
| 248.3 | 0.736 | 8.1 | 1.32 | -- | -- | -- | -- | -0.0646 | -- | -- | -- | -- | -- |
| 223.77 | 0.7 | 8.15 | -- | 1.06 | -- | -- | -- | -0.22 | 23.8 | -- | -- | -- | -- |
| 265.21 | 0.761 | 8.1 | -- | -- | 1.38 | -- | -- | -0.0555 | -- | 86.86 | 5 | -- | -- |
| 293.95 | 0.8 | 8.13 | -- | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.77 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 2 | 143.03 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 3 | 143.32 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 4 | 143.38 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 5 | 143.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 6 | 143.54 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 7 | 143.57 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 8 | 143.63 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 9 | 143.71 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 11 | 143.85 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 16 | 143.94 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 21 | 144.14 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 29 | 144.57 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 30 | 144.63 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 32 | 144.72 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 34 | 144.73 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 35 | 144.76 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 39 | 144.88 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 43 | 145.01 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 60 | 145.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 93 | 146.25 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 97 | 146.28 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 128 | 146.85 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 145 | 147.18 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 162 | 147.47 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 174 | 147.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 207 | 148.19 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 255 | 148.73 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 257 | 148.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 295 | 149.08 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 541 | 150.85 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 590 | 151.11 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 693 | 151.62 | wind | 5.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 694 | 151.62 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 20 | 17 |
| 738 | 151.77 | temperature | 15.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 767 | 151.85 | wind | 5.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 796 | 151.98 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 862 | 152.28 | temperature | 25.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 932 | 152.51 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 933 | 152.51 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 936 | 152.53 | wind | 5.0 | 720 | < th | dose independent | rect. | 21 | 16 |