BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0248500 Os01g0248500|AK059893
         (240 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78780.2  | chr1:29621447-29622431 REVERSE LENGTH=239          215   2e-56

>AT1G78780.2 | chr1:29621447-29622431 REVERSE LENGTH=239
          Length = 238

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 2/224 (0%)

Query: 11  RDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQRLLKTWEME 70
           RDKYRS +   G+    WR  +PP+++ VN+LFEE +TK WPEGSLEE VQ  +K+WEME
Sbjct: 7   RDKYRSVLEDAGQ--VQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEME 64

Query: 71  LIHKVRPEDQKSVHSQKFCASTNGMRFLSRKEVMAIGGYNAFLQTKLPPEHRIYDPDNET 130
             HK+R +D K+++ +KF    NG   LS +E + +G YNA L+  LP E + Y P+ E+
Sbjct: 65  FSHKIRLQDFKTINPEKFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEEES 124

Query: 131 LESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGYMEGPFKEHPPHGKRVEFFGIC 190
            ES    F +A PRGFA E+L VYSGPP I FKFRHWGY EG FK H P G+ V+F G+ 
Sbjct: 125 FESSHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLG 184

Query: 191 IFHVDEEMKVEKTEYFYERGNFLASFLSTPXXXXXXXXXSGSGC 234
           +  VDE ++ E+ E +Y+ G      L  P         SG   
Sbjct: 185 VLKVDESLRAEEIEIYYDPGELFGGLLKGPPISETKTTDSGDNT 228



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,900,601
Number of extensions: 263200
Number of successful extensions: 537
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)