BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0248500 Os01g0248500|AK059893
(240 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0248500 Similar to Pathogen-related protein 476 e-135
Os01g0248300 Conserved hypothetical protein 441 e-124
Os01g0731100 Similar to Pathogen-related protein 240 7e-64
AK107594 105 3e-23
>Os01g0248500 Similar to Pathogen-related protein
Length = 240
Score = 476 bits (1226), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/240 (96%), Positives = 231/240 (96%)
Query: 1 MAAAGEASGGRDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKV 60
MAAAGEASGGRDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKV
Sbjct: 1 MAAAGEASGGRDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKV 60
Query: 61 QRLLKTWEMELIHKVRPEDQKSVHSQKFCASTNGMRFLSRKEVMAIGGYNAFLQTKLPPE 120
QRLLKTWEMELIHKVRPEDQKSVHSQKFCASTNGMRFLSRKEVMAIGGYNAFLQTKLPPE
Sbjct: 61 QRLLKTWEMELIHKVRPEDQKSVHSQKFCASTNGMRFLSRKEVMAIGGYNAFLQTKLPPE 120
Query: 121 HRIYDPDNETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGYMEGPFKEHPPH 180
HRIYDPDNETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGYMEGPFKEHPPH
Sbjct: 121 HRIYDPDNETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGYMEGPFKEHPPH 180
Query: 181 GKRVEFFGICIFHVDEEMKVEKTEYFYERGNFLASFLSTPXXXXXXXXXSGSGCPVMGGN 240
GKRVEFFGICIFHVDEEMKVEKTEYFYERGNFLASFLSTP SGSGCPVMGGN
Sbjct: 181 GKRVEFFGICIFHVDEEMKVEKTEYFYERGNFLASFLSTPAAAAAAEAASGSGCPVMGGN 240
>Os01g0248300 Conserved hypothetical protein
Length = 240
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/241 (89%), Positives = 224/241 (92%), Gaps = 2/241 (0%)
Query: 1 MAAAGE-ASGGRDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEK 59
MAAAGE ASGG DKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEK
Sbjct: 1 MAAAGEEASGGGDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEK 60
Query: 60 VQRLLKTWEMELIHKVRPEDQKSVHSQKFCASTNGMRFLSRKEVMAIGGYNAFLQTKLPP 119
VQRLLKTWEMEL+HKVRPEDQKSVHSQKFC+STNGMRFL+RK++MAIG YNAFLQTKLPP
Sbjct: 61 VQRLLKTWEMELVHKVRPEDQKSVHSQKFCSSTNGMRFLNRKDLMAIGSYNAFLQTKLPP 120
Query: 120 EHRIYDPDNETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGYMEGPFKEHPP 179
EHRIYDPD ETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWG+MEGPF EHPP
Sbjct: 121 EHRIYDPDKETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGHMEGPFMEHPP 180
Query: 180 HGKRVEFFGICIFHVDEEMKVEKTEYFYERGNFLASFLSTPXXXXXXXXXSGSGCPVMGG 239
HG+RVEFFGICIFHVDEEMKVEK E+FYERGNFLASFLS SGSGCPVMGG
Sbjct: 181 HGERVEFFGICIFHVDEEMKVEKAEFFYERGNFLASFLSA-PAAAATDAASGSGCPVMGG 239
Query: 240 N 240
N
Sbjct: 240 N 240
>Os01g0731100 Similar to Pathogen-related protein
Length = 266
Score = 240 bits (613), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 114/206 (55%), Positives = 145/206 (70%), Gaps = 1/206 (0%)
Query: 3 AAGEASGGRDKYRSFMYGEGEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQR 62
AA ++SGG D+YRS + G+GEK+TVWR G+PP YD VN LFE ERT+EWP GSLEE VQ
Sbjct: 4 AAADSSGG-DRYRSHLTGDGEKNTVWRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQN 62
Query: 63 LLKTWEMELIHKVRPEDQKSVHSQKFCASTNGMRFLSRKEVMAIGGYNAFLQTKLPPEHR 122
+KTWEMEL +K + ED KSV +F S NG R L+ +E +A+G YNA L + + P
Sbjct: 63 AIKTWEMELSYKAKLEDFKSVSPGRFRLSVNGGRPLTGEETLAVGSYNALLTSPILPGAG 122
Query: 123 IYDPDNETLESGMATFLTAFPRGFAIEVLDVYSGPPRIVFKFRHWGYMEGPFKEHPPHGK 182
YD ET ES F AFPRGFA EV+ VYSGPP I FKFRHWG+M+GP+K H P G
Sbjct: 123 AYDAAAETFESSHDLFRAAFPRGFAWEVIRVYSGPPVITFKFRHWGHMDGPYKGHAPTGD 182
Query: 183 RVEFFGICIFHVDEEMKVEKTEYFYE 208
+VEF+G+ + VDE+++ E E +Y+
Sbjct: 183 KVEFYGVAVLKVDEQLRAEDVEVYYD 208
>AK107594
Length = 451
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 15/196 (7%)
Query: 22 GEKDTVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQRLLKTWEMELIHKVRPEDQK 81
G++ WR G P+Y K++EE + GSL + V+ L+K WE+E K R ED +
Sbjct: 30 GDEGVKWRYGRAPDYSKTRKVWEEGKKMNHAAGSLPQLVENLVKNWEVEASFKPRLEDWR 89
Query: 82 SVHSQKFCASTNGMRFLSRKEVMAIGGYNAFLQTKLPPEHRIYDPDNETLESGMATFLTA 141
++ + + NG + + ++ +G YNA + + Y P+N S TF
Sbjct: 90 TIDHANYTFAINGGPPQTAEHMLKVGTYNAIIAP-----NEFYSPENSDFASSHKTFKRM 144
Query: 142 FPRGFAIEVLDVYSGPPRIVFKFRHWGYMEGPF---------KEHPPHGKRVEFFGICIF 192
P FA EVL+VYSGPP + FK+RHWG M+ + HG ++ G+ +
Sbjct: 145 MPT-FAWEVLEVYSGPPTVAFKWRHWGTMKNDYVGFNDKGEKVTAKAHGGPIDIQGVTVA 203
Query: 193 HVDEEMKVEKTEYFYE 208
VD++++++ + +++
Sbjct: 204 TVDDKVRLQAVDTWFD 219
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,562,437
Number of extensions: 417539
Number of successful extensions: 673
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 4
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)