BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0721900 Os01g0721900|AK121001
(380 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0721900 Similar to Nuclear RNA binding protein B (Frag... 300 9e-82
Os05g0533100 Similar to Nuclear RNA binding protein (Fragment) 195 6e-50
Os01g0603000 Similar to Nuclear RNA binding protein A 173 2e-43
Os05g0589600 Similar to Nuclear RNA binding protein B (Frag... 150 1e-36
>Os01g0721900 Similar to Nuclear RNA binding protein B (Fragment)
Length = 380
Score = 300 bits (769), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 164/245 (66%), Positives = 164/245 (66%)
Query: 136 PRAPFHXXXXXXXXXXXXXDDSERPPRRNYERHSGTGRGYEMKRDGAGRGNWGTATDEAL 195
PRAPFH DDSERPPRRNYERHSGTGRGYEMKRDGAGRGNWGTATDEAL
Sbjct: 136 PRAPFHGGRRGGYRNGEYGDDSERPPRRNYERHSGTGRGYEMKRDGAGRGNWGTATDEAL 195
Query: 196 AQETEEALKVEESAPIAEKQGEQDDAPTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 255
AQETEEALKVEESAPIAEKQGEQDDAPTG
Sbjct: 196 AQETEEALKVEESAPIAEKQGEQDDAPTGEKDNKEGAANEEEEKEEDKEMTLEEFEKLRE 255
Query: 256 XXXXXXXXFKAEERKVEVDKDLQSMQPLSTKKGNDEIFIKLGSDKDKKKENAERDERAKK 315
FKAEERKVEVDKDLQSMQPLSTKKGNDEIFIKLGSDKDKKKENAERDERAKK
Sbjct: 256 EKRKALLAFKAEERKVEVDKDLQSMQPLSTKKGNDEIFIKLGSDKDKKKENAERDERAKK 315
Query: 316 SVSINEFLKPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYSTSAPSIEDQAQFPTLG 375
SVSINEFLKPAE PYSTSAPSIEDQAQFPTLG
Sbjct: 316 SVSINEFLKPAEGERYYGGRGRGRGRGDRGGRGYGGGYQRGPYSTSAPSIEDQAQFPTLG 375
Query: 376 GKPRA 380
GKPRA
Sbjct: 376 GKPRA 380
>Os05g0533100 Similar to Nuclear RNA binding protein (Fragment)
Length = 221
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 127/219 (57%), Gaps = 3/219 (1%)
Query: 162 RRNYERHSGTGRGYEMKRDGAGRGNWGTATDEALAQETEEALKVEESAPIAEKQGEQDDA 221
RR YERHSGTGRGYEMKR+G+GRGNWGT TDE LAQET EALK++E AP+ EKQG + A
Sbjct: 3 RRPYERHSGTGRGYEMKREGSGRGNWGTTTDEILAQETGEALKLDEKAPVTEKQGAPEGA 62
Query: 222 PTGXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXFKAEERKVEVDKDLQSM 280
P K EERKVE+DKDL+SM
Sbjct: 63 PQADENKDNKDVTPNEEEKEEDKEMTLEEFEKLREEKRKALLSLKTEERKVEIDKDLKSM 122
Query: 281 QPLSTKKGNDEIFIKLGSDKD--KKKENAERDERAKKSVSINEFLKPAEXXXXXXXXXXX 338
QPLS KK NDE+FIKLGSDKD KKKENAERDERAKKSVSINEFLKPAE
Sbjct: 123 QPLSNKKENDEVFIKLGSDKDALKKKENAERDERAKKSVSINEFLKPAEGERYYGGRGRG 182
Query: 339 XXXXXXXXXXXXXXXXXXPYSTSAPSIEDQAQFPTLGGK 377
+ AP I+DQ+QFPTLG K
Sbjct: 183 RGRGDRGGFRGGYGEGHRSAAPPAPEIKDQSQFPTLGRK 221
>Os01g0603000 Similar to Nuclear RNA binding protein A
Length = 378
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 125/230 (54%), Gaps = 11/230 (4%)
Query: 155 DDSERPPRRNYERHSGTGRGYEMKRDGAGRGNWGTATDEALAQETEEALKVEESAPIAEK 214
D+S R P R YER SGTGRGY MKR+GAGRGNWGT TDEALAQE+ EA+ +E S + E
Sbjct: 150 DESGRAPHRAYERRSGTGRGYGMKREGAGRGNWGTVTDEALAQESGEAVSIEVSVTVTE- 208
Query: 215 QGEQDDAPTG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKAEERKV 271
+ +Q+D P K EERKV
Sbjct: 209 ENKQEDVPQSDEVEKHKEGESNEEEEKEPEDKEMTLEEYEKVLEEKRKALLSLKVEERKV 268
Query: 272 EVDKDLQSMQPLSTKKGNDEIFIKLGSDKDKKKENAERDERAKKSVSINEFLKPAEXXXX 331
VDK+LQSMQ LS KK +DE+FIKLGSDKDKKKEN ERDER +KS+SINEFLKPAE
Sbjct: 269 VVDKELQSMQQLSVKKDSDEVFIKLGSDKDKKKENVERDERTRKSLSINEFLKPAEGERY 328
Query: 332 XXXXXXXXXXXXXXXXXXXXXXXXXPYST----SAPSIEDQAQFPTLGGK 377
YS+ +AP IEDQAQFP L G+
Sbjct: 329 YSPGGRGRGRGRGRGDRGGFRDG---YSSRGPVAAPRIEDQAQFPGLAGR 375
>Os05g0589600 Similar to Nuclear RNA binding protein B (Fragment)
Length = 383
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 123/248 (49%), Gaps = 6/248 (2%)
Query: 136 PRAPFHXXXXXXXXXXXXXDDSERPPRRNYERHSGTGRGYEMKRDGAGRGNWGTATDEAL 195
PR P+ D PRR YERHSGTGRGYE+KR+G+GRGNWGT TDE L
Sbjct: 136 PRQPYRGGGRRGGYSDGQSGDDYGRPRRAYERHSGTGRGYELKREGSGRGNWGTVTDEGL 195
Query: 196 AQETEEALKVEESAPIAEKQGEQDDAPTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 255
AQE EA+ EE+ AE + + +D P
Sbjct: 196 AQEVAEAVNTEEAPATAEDEKKPEDVPQSEVDKDKESPENEEEEKEPEDKEMTLEEYEKV 255
Query: 256 XXXXXXX--XFKAEERKVEVDKDLQSMQPLSTKKGNDEIFIKLGS-DKDKKKENAERDER 312
KAEERKVEVDK+LQ+MQ LS KK N+E+FIKLGS KKKE E+DER
Sbjct: 256 LEEKRKALLALKAEERKVEVDKELQAMQQLSVKKANEEVFIKLGSDKDLKKKEKDEKDER 315
Query: 313 AKKSVSINEFLKPAEXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXPYSTSAPSIEDQA 369
KKS+SINEFLKPAE +AP IEDQA
Sbjct: 316 TKKSLSINEFLKPAEGERYYNPGRGRGRGRGRGDRGGFYGGYNGNGGRRQAAAPVIEDQA 375
Query: 370 QFPTLGGK 377
QFP+LGGK
Sbjct: 376 QFPSLGGK 383
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.307 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,176,517
Number of extensions: 227227
Number of successful extensions: 650
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 8
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 157 (65.1 bits)