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Os01g0721900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nuclear RNA binding protein B (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0215) R2 : 0.662
β1 : 1.12 (0.0787) R2dD : 0.157 R2D : 0.134
β2 : 1.49 (0.056) R2dC : 0.526 R2C : 0.509
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.134 (0.0459) R2dN8 : 0.00844 R2N8 : -0.0103
σ : 0.404
deviance : 74.43
__
_____
C
peak time of C : 17.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.76 0.375 13.5 1.1 1.47 -0.784 0.428 -0.149 0.127 18.8 46.69 8 -- --
63.83 0.372 13.5 1.1 1.47 -0.782 0.388 -- 0.127 18.8 46.55 7 -- --
64.21 0.373 13.5 1.11 1.47 -0.777 -- -0.1 0.128 18.8 46.68 7 -- --
64.2 0.373 13.5 1.1 1.47 -0.766 -- -- 0.129 18.7 46.56 7 -- --
79.05 0.414 13.4 1.31 -- -1.57 -- -0.536 0.105 -- 2.44 655 -- --
74.31 0.404 13.5 1.12 1.49 -- 0.221 -- 0.133 17.4 -- -- -- --
74.43 0.404 13.5 1.12 1.49 -- -- -- 0.134 17.4 -- -- -- --
77.08 0.409 13.5 1.09 -- -1.71 -- -- 0.0415 -- 2.705 655 -- --
96.08 0.457 13.5 -- 1.48 -0.798 -- -- 0.00932 18.9 44.36 7 -- --
189.61 0.643 13.4 1.07 -- -- -- -- 0.0969 -- -- -- -- --
107.63 0.485 13.5 -- 1.47 -- -- -- 0.00864 17.4 -- -- -- --
101.43 0.469 13.5 -- -- -1.74 -- -- 0.0209 -- 1.162e-05 659 -- --
219.93 0.692 13.5 -- -- -- -- -- -0.022 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.62 wind 5.0 270 < th dose independent rect. 3 2
2 55.80 wind 5.0 90 < th dose independent rect. 3 5
3 56.00 wind 9.0 270 < th dose independent rect. 5 22
4 56.22 temperature 10.0 270 > th dose dependent rect. 6 7
5 56.25 temperature 15.0 270 > th dose independent rect. 13 17
6 56.31 wind 9.0 90 < th dose independent rect. 8 19
7 56.35 wind 5.0 270 < th dose independent rect. 1 5
10 56.55 precipitation 0.1 90 < th dose independent rect. 3 5
11 56.55 precipitation 0.1 90 < th dose dependent rect. 3 5
13 56.58 precipitation 0.1 270 < th dose independent rect. 3 2
14 56.58 precipitation 0.1 270 < th dose dependent rect. 3 2
16 56.70 precipitation 0.1 90 < th dose independent rect. 8 19
17 56.70 precipitation 0.1 90 < th dose dependent rect. 8 19
19 56.75 temperature 10.0 90 > th dose independent rect. 3 5
21 56.75 temperature 30.0 90 < th dose independent rect. 3 5
22 56.75 humidity 50.0 90 > th dose independent rect. 3 5
24 56.75 atmosphere 995.0 90 > th dose independent rect. 3 5
25 56.75 atmosphere 1015.0 90 < th dose independent rect. 3 5
26 56.75 temperature 10.0 90 > th dose independent rect. 8 19
28 56.83 radiation 40.0 90 < th dose independent rect. 3 5
29 56.87 wind 1.0 270 > th dose independent rect. 3 2
31 56.88 radiation 1.0 270 < th dose dependent rect. 3 2
33 56.89 temperature 10.0 270 > th dose independent rect. 3 2
35 56.89 temperature 30.0 270 < th dose independent rect. 3 2
36 56.89 humidity 50.0 270 > th dose independent rect. 3 2
39 56.89 atmosphere 995.0 270 > th dose independent rect. 3 2
40 56.89 atmosphere 1010.0 270 < th dose independent rect. 3 2
42 56.89 radiation 20.0 270 < th dose independent rect. 3 2
45 56.89 temperature 10.0 270 > th dose independent rect. 5 22
46 56.90 radiation 40.0 270 < th dose dependent rect. 3 2
52 56.97 radiation 1.0 270 < th dose independent rect. 3 2
55 57.01 temperature 10.0 90 > th dose dependent rect. 8 6
57 57.01 radiation 20.0 270 < th dose dependent rect. 1 8
61 57.20 wind 7.0 270 < th dose independent rect. 6 19
67 57.32 wind 9.0 90 < th dose dependent rect. 3 5
70 57.39 precipitation 0.1 270 < th dose independent rect. 5 22
72 57.39 precipitation 0.1 270 < th dose dependent rect. 5 22
74 57.44 atmosphere 1000.0 90 > th dose dependent rect. 3 5
77 57.47 temperature 10.0 270 > th dose dependent rect. 8 2
78 57.48 temperature 10.0 10 > th dose dependent rect. 8 7
79 57.50 wind 1.0 270 > th dose independent rect. 1 5
81 57.55 temperature 15.0 10 > th dose independent rect. 15 17
87 57.59 precipitation 0.1 270 < th dose independent rect. 1 5
89 57.59 precipitation 0.1 270 < th dose dependent rect. 1 5
94 57.65 atmosphere 1010.0 270 < th dose independent rect. 13 17
96 57.67 radiation 20.0 270 < th dose dependent rect. 1 12
103 57.72 atmosphere 1000.0 10 > th dose dependent rect. 3 5
105 57.73 radiation 10.0 270 < th dose independent rect. 1 7
111 57.78 wind 9.0 270 < th dose dependent rect. 3 2
113 57.79 temperature 10.0 270 > th dose dependent rect. 7 4
117 57.80 precipitation 0.1 270 < th dose independent rect. 6 19
119 57.80 precipitation 0.1 270 < th dose dependent rect. 6 19
121 57.83 temperature 10.0 270 > th dose independent rect. 1 5
123 57.83 temperature 30.0 270 < th dose independent rect. 1 5
124 57.83 humidity 50.0 270 > th dose independent rect. 1 5
127 57.83 atmosphere 995.0 270 > th dose independent rect. 1 5
128 57.83 atmosphere 1015.0 270 < th dose independent rect. 1 5
129 57.83 radiation 20.0 270 < th dose independent rect. 1 5
132 57.83 temperature 10.0 270 > th dose independent rect. 6 19
142 57.91 atmosphere 1000.0 270 > th dose dependent rect. 1 5
149 57.98 wind 7.0 270 < th dose independent rect. 6 7
152 58.00 wind 9.0 10 < th dose independent rect. 8 19
155 58.03 precipitation 0.1 10 < th dose independent rect. 3 5
157 58.03 precipitation 0.1 10 < th dose dependent rect. 3 5
159 58.04 humidity 50.0 90 > th dose independent rect. 8 19
164 58.06 radiation 40.0 90 < th dose independent rect. 3 17
181 58.12 atmosphere 1015.0 90 < th dose independent rect. 15 17
192 58.16 atmosphere 995.0 90 > th dose independent rect. 8 19
197 58.18 wind 1.0 270 > th dose independent rect. 24 7
199 58.18 atmosphere 1000.0 270 > th dose dependent rect. 3 2
212 58.23 radiation 40.0 270 < th dose dependent rect. 1 16
216 58.25 radiation 40.0 90 < th dose independent rect. 13 19
220 58.28 radiation 40.0 90 < th dose dependent rect. 3 5
252 58.32 radiation 40.0 270 < th dose independent rect. 11 19
297 58.37 humidity 50.0 270 > th dose independent rect. 6 7
356 58.48 humidity 50.0 270 > th dose dependent rect. 3 2
390 58.59 precipitation 0.1 270 < th dose independent rect. 6 7
391 58.59 precipitation 0.1 270 < th dose dependent rect. 6 7
393 58.60 temperature 15.0 270 > th dose independent rect. 6 7
399 58.64 atmosphere 995.0 270 > th dose independent rect. 6 7
400 58.64 atmosphere 1015.0 270 < th dose independent rect. 6 7
404 58.66 humidity 50.0 270 > th dose independent rect. 20 15
405 58.66 atmosphere 1015.0 10 < th dose independent rect. 15 17
408 58.67 temperature 15.0 270 > th dose independent rect. 11 9
411 58.68 wind 9.0 10 < th dose dependent rect. 3 5
425 58.75 temperature 30.0 270 < th dose dependent rect. 3 2
430 58.76 temperature 15.0 270 > th dose independent rect. 11 20
434 58.79 wind 9.0 270 < th dose independent rect. 20 15
436 58.80 temperature 10.0 90 > th dose dependent rect. 3 5
437 58.81 wind 1.0 90 > th dose independent rect. 8 19
452 58.89 wind 9.0 90 < th dose independent rect. 8 7
457 58.90 atmosphere 1015.0 270 < th dose independent rect. 11 9
458 58.90 temperature 10.0 270 > th dose independent rect. 20 15
459 58.90 atmosphere 995.0 270 > th dose independent rect. 20 15
467 58.93 precipitation 0.1 90 < th dose independent rect. 8 7
468 58.93 radiation 40.0 10 < th dose independent rect. 4 16
469 58.93 precipitation 0.1 90 < th dose dependent rect. 8 7
480 58.99 wind 9.0 1440 < th dose independent rect. 4 5
481 58.99 temperature 10.0 1440 > th dose independent rect. 4 5
484 58.99 humidity 50.0 1440 > th dose independent rect. 4 5
486 58.99 atmosphere 995.0 1440 > th dose independent rect. 4 5
487 58.99 atmosphere 1015.0 1440 < th dose independent rect. 4 5
488 58.99 radiation 1.0 270 > th dose independent rect. 6 7
489 58.99 temperature 10.0 1440 > th dose independent rect. 9 19
501 59.00 temperature 10.0 270 > th dose dependent rect. 3 2
502 59.00 radiation 40.0 90 < th dose dependent rect. 3 8
505 59.01 atmosphere 995.0 270 > th dose independent rect. 13 17
506 59.01 humidity 50.0 270 > th dose independent rect. 6 19
514 59.04 temperature 10.0 90 > th dose independent rect. 8 7
515 59.04 atmosphere 1015.0 90 < th dose independent rect. 8 7
532 59.06 radiation 1.0 90 > th dose independent rect. 8 7
537 59.07 precipitation 0.1 270 < th dose independent rect. 13 17
538 59.07 precipitation 0.1 270 < th dose dependent rect. 13 17
555 59.13 radiation 1.0 270 < th dose independent rect. 2 10
579 59.19 radiation 40.0 10 < th dose independent rect. 12 20
585 59.21 wind 9.0 270 < th dose independent rect. 13 17
587 59.21 radiation 30.0 270 < th dose dependent sin 8 NA
589 59.22 wind 1.0 90 > th dose independent rect. 8 7
612 59.26 atmosphere 995.0 90 > th dose independent rect. 8 7
615 59.26 radiation 20.0 270 < th dose dependent sin 6 NA
621 59.27 atmosphere 995.0 90 > th dose independent rect. 15 17
637 59.28 radiation 40.0 90 < th dose dependent rect. 3 16
639 59.29 radiation 40.0 270 < th dose independent rect. 1 16
643 59.30 humidity 50.0 90 > th dose independent rect. 8 7
646 59.30 radiation 40.0 10 < th dose independent rect. 3 19
649 59.31 precipitation 0.1 270 < th dose independent rect. 20 15
652 59.31 wind 9.0 270 < th dose dependent rect. 6 7
654 59.31 precipitation 0.1 270 < th dose dependent rect. 20 15
685 59.36 precipitation 0.1 270 < th dose independent rect. 11 9
686 59.36 radiation 1.0 270 > th dose dependent rect. 8 2
688 59.36 precipitation 0.1 270 < th dose dependent rect. 11 9
697 59.38 radiation 20.0 90 < th dose independent rect. 3 8
702 59.40 radiation 1.0 10 > th dose independent rect. 8 7
722 59.43 wind 9.0 270 < th dose dependent rect. 6 19
723 59.44 wind 1.0 270 > th dose independent rect. 11 9
727 59.44 humidity 50.0 90 > th dose dependent rect. 3 5
747 59.48 atmosphere 995.0 270 > th dose independent rect. 6 19
755 59.50 atmosphere 995.0 270 > th dose independent rect. 11 9
763 59.51 radiation 40.0 90 < th dose dependent rect. 13 19
771 59.55 wind 9.0 10 < th dose independent rect. 8 7
791 59.61 radiation 1.0 270 > th dose independent sin 4 NA
794 59.61 radiation 40.0 90 < th dose dependent rect. 3 14
815 59.63 temperature 10.0 10 > th dose dependent rect. 3 5
830 59.67 temperature 15.0 270 > th dose independent rect. 10 22
836 59.68 temperature 10.0 10 > th dose independent rect. 8 7
838 59.68 atmosphere 995.0 10 > th dose independent rect. 8 7
839 59.68 atmosphere 1015.0 10 < th dose independent rect. 8 7
840 59.68 precipitation 0.1 10 < th dose independent rect. 8 7
842 59.68 precipitation 0.1 10 < th dose dependent rect. 8 7
847 59.69 radiation 40.0 10 < th dose dependent rect. 12 20
853 59.70 temperature 30.0 90 < th dose dependent rect. 3 5
867 59.73 wind 7.0 270 < th dose independent rect. 18 8
919 59.79 atmosphere 995.0 10 > th dose independent rect. 15 17
945 59.82 radiation 40.0 10 < th dose dependent rect. 4 16
954 59.83 radiation 1.0 270 < th dose dependent rect. 18 8
963 59.85 radiation 1.0 270 < th dose independent rect. 18 8
981 59.87 precipitation 0.1 270 < th dose independent rect. 18 8
985 59.87 precipitation 0.1 270 < th dose dependent rect. 18 8