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Os05g0589600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nuclear RNA binding protein B (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.017) R2 : 0.591
β1 : 1.02 (0.0624) R2dD : 0.247 R2D : 0.211
β2 : 0.898 (0.0444) R2dC : 0.368 R2C : 0.348
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.148 (0.0364) R2dN8 : 0.0198 R2N8 : -0.0132
σ : 0.32
deviance : 46.81
__
_____
C
peak time of C : 17.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.38 0.302 12.6 0.994 0.858 0.518 0.593 1.15 0.127 18.5 12.04 72 -- --
43.28 0.309 12.6 1.01 0.877 0.392 0.539 -- 0.149 18.3 7.269 68 -- --
42.21 0.303 12.6 0.993 0.868 0.521 -- 0.999 0.123 18.6 7.462 70 -- --
43.87 0.311 12.6 1.01 0.882 0.43 -- -- 0.151 18.5 5.228 69 -- --
57.63 0.354 12.6 0.968 -- 0.902 -- 0.636 0.0521 -- -16.38 679 -- --
45.81 0.317 12.6 1.02 0.893 -- 0.639 -- 0.145 17.5 -- -- -- --
46.81 0.32 12.6 1.02 0.898 -- -- -- 0.148 17.6 -- -- -- --
58.18 0.355 12.6 0.943 -- 0.922 -- -- 0.0415 -- -11.87 679 -- --
70.55 0.393 12.6 -- 0.87 0.463 -- -- 0.0393 18.6 5.228 69 -- --
88.68 0.44 12.6 0.986 -- -- -- -- 0.126 -- -- -- -- --
73.97 0.402 12.6 -- 0.881 -- -- -- 0.0346 17.6 -- -- -- --
81.61 0.421 12.6 -- -- 0.951 -- -- -0.0682 -- -129.2 696 -- --
114.32 0.499 12.6 -- -- -- -- -- 0.0166 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.53 temperature 10.0 90 > th dose dependent rect. 8 7
3 37.63 temperature 10.0 10 > th dose dependent rect. 8 7
4 37.68 temperature 15.0 270 > th dose dependent rect. 8 2
9 37.78 wind 5.0 270 < th dose independent rect. 3 2
12 37.82 temperature 10.0 270 > th dose dependent rect. 6 7
15 37.89 wind 5.0 90 < th dose independent rect. 3 5
19 38.03 temperature 15.0 270 > th dose dependent rect. 7 4
25 38.16 precipitation 0.1 270 < th dose independent rect. 3 2
26 38.16 precipitation 0.1 270 < th dose dependent rect. 3 2
29 38.29 precipitation 0.1 90 < th dose independent rect. 8 19
30 38.29 wind 9.0 270 < th dose independent rect. 5 22
33 38.29 precipitation 0.1 90 < th dose dependent rect. 8 19
35 38.31 temperature 15.0 90 > th dose independent rect. 15 17
37 38.32 precipitation 0.1 90 < th dose independent rect. 3 5
39 38.32 precipitation 0.1 90 < th dose dependent rect. 3 5
42 38.35 wind 9.0 90 < th dose independent rect. 8 19
44 38.36 wind 1.0 90 > th dose independent rect. 8 7
50 38.44 wind 7.0 90 < th dose independent rect. 8 7
53 38.45 temperature 10.0 43200 > th dose independent rect. 9 7
54 38.45 wind 9.0 90 < th dose dependent rect. 3 5
57 38.47 temperature 15.0 10 > th dose independent rect. 15 17
61 38.48 precipitation 0.1 90 < th dose independent rect. 8 7
62 38.48 precipitation 0.1 90 < th dose dependent rect. 8 7
68 38.53 temperature 10.0 90 > th dose independent rect. 3 5
70 38.53 temperature 30.0 90 < th dose independent rect. 3 5
71 38.53 humidity 50.0 90 > th dose independent rect. 3 5
73 38.53 atmosphere 995.0 90 > th dose independent rect. 3 5
74 38.53 atmosphere 1015.0 90 < th dose independent rect. 3 5
76 38.53 temperature 10.0 90 > th dose independent rect. 8 19
79 38.54 wind 9.0 270 < th dose dependent rect. 3 2
83 38.56 temperature 10.0 90 > th dose independent rect. 8 7
84 38.56 atmosphere 1015.0 90 < th dose independent rect. 8 7
87 38.57 temperature 10.0 270 > th dose independent rect. 3 2
89 38.57 temperature 30.0 270 < th dose independent rect. 3 2
90 38.57 humidity 50.0 270 > th dose independent rect. 3 2
93 38.57 atmosphere 995.0 270 > th dose independent rect. 3 2
94 38.57 atmosphere 1010.0 270 < th dose independent rect. 3 2
96 38.57 radiation 20.0 270 < th dose independent rect. 3 2
99 38.57 temperature 10.0 270 > th dose independent rect. 5 22
103 38.59 radiation 40.0 90 < th dose independent rect. 3 5
105 38.59 radiation 30.0 270 < th dose dependent rect. 3 2
108 38.62 radiation 1.0 270 < th dose independent rect. 3 2
110 38.62 radiation 40.0 90 < th dose independent rect. 15 17
114 38.65 radiation 1.0 90 > th dose independent rect. 8 7
118 38.68 wind 9.0 10 < th dose independent rect. 8 7
119 38.68 atmosphere 995.0 90 > th dose independent rect. 8 7
120 38.68 wind 9.0 90 < th dose independent rect. 15 17
122 38.68 radiation 1.0 270 > th dose dependent rect. 8 2
127 38.71 radiation 1.0 10 > th dose independent rect. 8 7
129 38.71 precipitation 0.1 270 < th dose independent rect. 5 22
130 38.71 temperature 10.0 90 > th dose dependent rect. 3 5
131 38.71 precipitation 0.1 270 < th dose dependent rect. 5 22
134 38.73 temperature 10.0 10 > th dose independent rect. 8 7
136 38.73 atmosphere 995.0 10 > th dose independent rect. 8 7
137 38.73 atmosphere 1015.0 10 < th dose independent rect. 8 7
138 38.73 precipitation 0.1 10 < th dose independent rect. 8 7
140 38.73 precipitation 0.1 10 < th dose dependent rect. 8 7
141 38.74 wind 5.0 270 < th dose independent rect. 1 6
155 38.78 humidity 50.0 90 > th dose independent rect. 8 6
168 38.82 temperature 10.0 1440 > th dose independent rect. 9 7
171 38.82 wind 7.0 270 < th dose independent rect. 6 8
172 38.82 temperature 10.0 1440 > th dose independent rect. 16 17
181 38.84 humidity 90.0 90 < th dose independent rect. 8 7
182 38.84 wind 9.0 10 < th dose independent rect. 15 17
188 38.85 atmosphere 995.0 90 > th dose independent rect. 15 17
203 38.89 radiation 40.0 10 < th dose independent rect. 15 17
210 38.91 humidity 50.0 90 > th dose independent rect. 15 17
215 38.92 precipitation 0.1 10 < th dose independent rect. 15 17
217 38.92 atmosphere 1000.0 90 > th dose dependent rect. 3 5
218 38.92 precipitation 0.1 10 < th dose dependent rect. 15 17
226 38.94 atmosphere 995.0 10 > th dose independent rect. 15 17
242 38.96 precipitation 0.1 270 < th dose independent rect. 2 15
245 38.96 precipitation 0.1 270 < th dose dependent rect. 2 15
248 38.97 atmosphere 995.0 90 > th dose independent rect. 8 19
250 38.98 wind 1.0 270 > th dose independent rect. 3 2
268 39.00 wind 9.0 10 < th dose dependent rect. 4 4
288 39.03 temperature 10.0 270 > th dose dependent rect. 3 2
322 39.09 wind 9.0 270 < th dose independent rect. 17 9
323 39.09 precipitation 0.1 90 < th dose independent rect. 15 17
324 39.09 humidity 50.0 270 > th dose dependent rect. 3 2
327 39.09 precipitation 0.1 90 < th dose dependent rect. 15 17
337 39.12 radiation 10.0 270 < th dose independent rect. 17 9
339 39.13 radiation 10.0 270 > th dose independent rect. 8 2
345 39.13 temperature 10.0 270 > th dose independent rect. 17 9
349 39.13 temperature 10.0 270 > th dose independent rect. 2 15
350 39.13 atmosphere 1015.0 270 < th dose independent rect. 2 15
360 39.14 humidity 50.0 270 > th dose independent rect. 6 7
361 39.14 radiation 40.0 90 < th dose independent rect. 3 16
370 39.15 radiation 40.0 270 < th dose dependent rect. 17 9
374 39.16 radiation 40.0 90 < th dose dependent rect. 14 18
378 39.18 precipitation 0.1 270 < th dose independent rect. 6 8
380 39.18 atmosphere 1015.0 90 < th dose independent rect. 8 19
383 39.18 precipitation 0.1 270 < th dose dependent rect. 6 8
399 39.19 radiation 30.0 10 < th dose independent rect. 12 20
402 39.19 wind 9.0 90 < th dose dependent rect. 15 17
416 39.20 precipitation 0.1 270 < th dose independent rect. 17 9
421 39.20 precipitation 0.1 270 < th dose dependent rect. 17 9
450 39.23 radiation 40.0 90 < th dose dependent rect. 4 15
459 39.25 humidity 50.0 270 > th dose independent rect. 17 9
467 39.26 temperature 10.0 270 > th dose independent rect. 6 8
468 39.26 atmosphere 995.0 270 > th dose independent rect. 6 8
469 39.26 atmosphere 1015.0 270 < th dose independent rect. 6 8
497 39.31 radiation 1.0 90 < th dose dependent sin 13 NA
499 39.32 humidity 80.0 270 < th dose independent rect. 8 2
535 39.38 precipitation 0.1 90 < th dose independent rect. 19 9
539 39.38 precipitation 0.1 90 < th dose dependent rect. 19 9
561 39.41 atmosphere 995.0 270 > th dose independent rect. 2 15
565 39.42 radiation 1.0 270 > th dose independent rect. 6 7
572 39.42 temperature 10.0 90 > th dose dependent rect. 8 19
576 39.43 atmosphere 1000.0 270 > th dose dependent rect. 3 2
582 39.43 humidity 50.0 270 > th dose dependent rect. 18 8
599 39.45 atmosphere 995.0 270 > th dose independent rect. 17 9
624 39.47 radiation 40.0 10 < th dose dependent rect. 14 18
632 39.48 wind 9.0 270 < th dose independent rect. 2 15
635 39.48 humidity 50.0 30 > th dose independent rect. 8 20
640 39.49 precipitation 0.1 270 < th dose independent rect. 1 6
644 39.49 temperature 30.0 90 < th dose independent rect. 19 9
647 39.49 atmosphere 995.0 90 > th dose independent rect. 19 9
664 39.49 precipitation 0.1 270 < th dose dependent rect. 1 6
681 39.50 atmosphere 1015.0 270 < th dose dependent rect. 3 2
686 39.50 temperature 10.0 10 > th dose dependent rect. 8 19
693 39.52 radiation 20.0 270 < th dose dependent sin 7 NA
702 39.53 radiation 1.0 30 > th dose independent rect. 18 14
708 39.53 radiation 1.0 270 < th dose dependent rect. 3 9
714 39.54 wind 9.0 270 < th dose dependent rect. 1 6
725 39.55 radiation 20.0 270 < th dose dependent rect. 1 8
738 39.58 radiation 1.0 270 > th dose dependent sin 9 NA
754 39.59 wind 1.0 90 > th dose independent rect. 8 19
784 39.62 radiation 40.0 10 < th dose dependent rect. 12 20
785 39.63 temperature 25.0 270 > th dose independent rect. 8 2
820 39.66 radiation 1.0 270 < th dose independent rect. 3 7
837 39.66 temperature 10.0 10 > th dose dependent rect. 8 16
865 39.68 radiation 1.0 30 > th dose independent rect. 5 3
882 39.68 radiation 40.0 10 < th dose independent rect. 4 16
891 39.69 atmosphere 1005.0 90 > th dose independent rect. 3 5
896 39.69 radiation 1.0 90 > th dose independent rect. 14 18
906 39.69 wind 9.0 90 < th dose dependent rect. 23 9
908 39.70 wind 9.0 1440 < th dose independent rect. 5 4
909 39.70 temperature 10.0 1440 > th dose independent rect. 5 4
912 39.70 humidity 50.0 1440 > th dose independent rect. 5 4
914 39.70 atmosphere 995.0 1440 > th dose independent rect. 5 4
915 39.70 atmosphere 1015.0 1440 < th dose independent rect. 5 4
923 39.70 temperature 10.0 1440 > th dose independent rect. 9 20
959 39.73 temperature 10.0 270 > th dose independent rect. 1 6
961 39.73 temperature 30.0 270 < th dose independent rect. 1 6
962 39.73 humidity 50.0 270 > th dose independent rect. 1 6
964 39.73 atmosphere 995.0 270 > th dose independent rect. 1 6
965 39.73 atmosphere 1015.0 270 < th dose independent rect. 1 6
966 39.73 radiation 30.0 270 < th dose independent rect. 1 6
981 39.74 wind 1.0 270 > th dose independent rect. 8 2