BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0719700 Os01g0719700|Os01g0719700
         (500 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0719700  Similar to [4Fe-4S] cluster assembly factor         855   0.0  
Os03g0627300  Similar to ATP binding protein-like                 102   7e-22

>Os01g0719700 Similar to [4Fe-4S] cluster assembly factor
          Length = 500

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/500 (86%), Positives = 430/500 (86%)

Query: 1   MRNLRXXXXXXXXXXXXXXXXXXXXXXXXRGXXXXXXXXXXXXXXXHGWCPSPXXXXXXX 60
           MRNLR                        RG               HGWCPSP       
Sbjct: 1   MRNLRAAAPASFLAPPAPPLLLPPSTPTPRGAFSAKASPAAAAAQAHGWCPSPRRVGRLR 60

Query: 61  XXXXXXXXXXXXXEDAKKDVLVALSQIIDPDFGTDIVSCGFVKDLEISEALEEVSFRLEL 120
                        EDAKKDVLVALSQIIDPDFGTDIVSCGFVKDLEISEALEEVSFRLEL
Sbjct: 61  RRAGAASSSVASVEDAKKDVLVALSQIIDPDFGTDIVSCGFVKDLEISEALEEVSFRLEL 120

Query: 121 TTPACPIKDMFEEKANEVVAALPWVKKGGVGKSTVAVNLAYTLAGMGARVGIFDADVFGP 180
           TTPACPIKDMFEEKANEVVAALPWVKKGGVGKSTVAVNLAYTLAGMGARVGIFDADVFGP
Sbjct: 121 TTPACPIKDMFEEKANEVVAALPWVKKGGVGKSTVAVNLAYTLAGMGARVGIFDADVFGP 180

Query: 181 SLPTMVSPENRLLVMNPESRSILPTEYLGVKMVSFGFAGQGRAIMRGPMVSGVINQLLTT 240
           SLPTMVSPENRLLVMNPESRSILPTEYLGVKMVSFGFAGQGRAIMRGPMVSGVINQLLTT
Sbjct: 181 SLPTMVSPENRLLVMNPESRSILPTEYLGVKMVSFGFAGQGRAIMRGPMVSGVINQLLTT 240

Query: 241 TDWGELDYLVIDMPPGTGDIHLTLCQVVAPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 300
           TDWGELDYLVIDMPPGTGDIHLTLCQVVAPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV
Sbjct: 241 TDWGELDYLVIDMPPGTGDIHLTLCQVVAPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 300

Query: 301 PCVAVVENMCYFDADGKRFYPFGQGSGAQARKVVQQFGIPHLFDLPIRPTLSASGDTGIP 360
           PCVAVVENMCYFDADGKRFYPFGQGSGAQARKVVQQFGIPHLFDLPIRPTLSASGDTGIP
Sbjct: 301 PCVAVVENMCYFDADGKRFYPFGQGSGAQARKVVQQFGIPHLFDLPIRPTLSASGDTGIP 360

Query: 361 EVVADPQGDVAKTFQNLGVCVVQQCAKIRQQVSTAVSYDRSIRAIRVKVPDSDEEFLLHP 420
           EVVADPQGDVAKTFQNLGVCVVQQCAKIRQQVSTAVSYDRSIRAIRVKVPDSDEEFLLHP
Sbjct: 361 EVVADPQGDVAKTFQNLGVCVVQQCAKIRQQVSTAVSYDRSIRAIRVKVPDSDEEFLLHP 420

Query: 421 ATVRRNDRSAQSVDEWTGEQKVQYGXXXXXXXXXXXRPMGNYAVSITWPDGFSQIAPYDQ 480
           ATVRRNDRSAQSVDEWTGEQKVQYG           RPMGNYAVSITWPDGFSQIAPYDQ
Sbjct: 421 ATVRRNDRSAQSVDEWTGEQKVQYGDIPEDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQ 480

Query: 481 LEMLERLVDVPRATTAAVSS 500
           LEMLERLVDVPRATTAAVSS
Sbjct: 481 LEMLERLVDVPRATTAAVSS 500



>Os03g0627300 Similar to ATP binding protein-like
          Length = 182

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 6/164 (3%)

Query: 230 VSGVINQLLTTTDWGELDYLVIDMPPGTGDIHLTLCQVVAPLTAAVIVTTPQKLAFIDVA 289
           V   + ++     WG LD LV+DMPPGTGD  L++ Q +  L+ A+IV+TPQ +A ID  
Sbjct: 14  VMSALEKITRGVAWGNLDILVVDMPPGTGDAQLSMSQRLR-LSGALIVSTPQDIALIDAR 72

Query: 290 KGVRMFSKLKVPCVAVVENMCYFDAD--GKRFYPFGQGSGAQARKVVQQFGIPHLFDLPI 347
           +G  MF K++VP + +VENM  F     G++ Y FG+G G   ++  ++  +  + ++P+
Sbjct: 73  RGANMFRKVQVPILGLVENMSCFKCPKCGEKSYIFGEGGG---QRTAEEMDMKLIGEIPL 129

Query: 348 RPTLSASGDTGIPEVVADPQGDVAKTFQNLGVCVVQQCAKIRQQ 391
              +    D G P V++ P    A+ +  +   V+ +  ++ ++
Sbjct: 130 EIDIRTGSDEGTPIVISSPDSASAQAYIQVAEKVIHRLKELAEE 173



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,505,215
Number of extensions: 595370
Number of successful extensions: 1480
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1477
Number of HSP's successfully gapped: 2
Length of query: 500
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 395
Effective length of database: 11,553,331
Effective search space: 4563565745
Effective search space used: 4563565745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)