BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0713700 Os01g0713700|Os01g0713700
         (461 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0713700  Similar to Rev interacting protein mis3-like        828   0.0  
Os10g0452800  Similar to Rev interacting protein mis3-like        531   e-151

>Os01g0713700 Similar to Rev interacting protein mis3-like
          Length = 461

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/461 (88%), Positives = 409/461 (88%)

Query: 1   MASEGDASALVAAAEGRKPRHXXXXXXXXXXXXXXNIDHWKIEEFDPSWNEGGMLEVTSF 60
           MASEGDASALVAAAEGRKPRH              NIDHWKIEEFDPSWNEGGMLEVTSF
Sbjct: 1   MASEGDASALVAAAEGRKPRHKGKHDKPKPWDDDPNIDHWKIEEFDPSWNEGGMLEVTSF 60

Query: 61  STLFPQYRGKSPHPTPPSALSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFGVACEL 120
           STLFPQYRGKSPHPTPPSALSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFGVACEL
Sbjct: 61  STLFPQYRGKSPHPTPPSALSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFGVACEL 120

Query: 121 NLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIR 180
           NLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIR
Sbjct: 121 NLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIR 180

Query: 181 NKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKN 240
           NKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKN
Sbjct: 181 NKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKN 240

Query: 241 VKHPVYHIKELLIKRELVKNPALAHESWDXXXXXXXXXXXXXXXXXXXXXXQYTPFPPPQ 300
           VKHPVYHIKELLIKRELVKNPALAHESWD                      QYTPFPPPQ
Sbjct: 241 VKHPVYHIKELLIKRELVKNPALAHESWDKFLPKFKKKNVKQKKPLTKEKKQYTPFPPPQ 300

Query: 301 QPSKIDLELESGECFMSDKKKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYE 360
           QPSKIDLELESGECFMSDKKKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYE
Sbjct: 301 QPSKIDLELESGECFMSDKKKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYE 360

Query: 361 SAKSIINNGEIADMXXXXXXXXXXXXXXXXQENGSAHVQEQEAVERCMHVSAIDQENSVR 420
           SAKSIINNGEIADM                QENGSAHVQEQEAVERCMHVSAIDQENSVR
Sbjct: 361 SAKSIINNGEIADMAKSLKKKAKELRKNEEQENGSAHVQEQEAVERCMHVSAIDQENSVR 420

Query: 421 RGDDILIFVMIPTVISYDACQVPGTDEDSAVTSDDTLRIRD 461
           RGDDILIFVMIPTVISYDACQVPGTDEDSAVTSDDTLRIRD
Sbjct: 421 RGDDILIFVMIPTVISYDACQVPGTDEDSAVTSDDTLRIRD 461



>Os10g0452800 Similar to Rev interacting protein mis3-like
          Length = 395

 Score =  531 bits (1369), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/398 (70%), Positives = 294/398 (73%), Gaps = 33/398 (8%)

Query: 1   MASE-GDASALVAAAE--GRK--PRHXXXXXXXXXXXXXXNIDHWKIEEFDPSWNEGGML 55
           MASE G+ +   ++AE  GRK  PRH              NIDHWKIE+FDPSWNEGGML
Sbjct: 1   MASEEGEEANAASSAEEVGRKKPPRHKGKHDKPKPWDDDPNIDHWKIEKFDPSWNEGGML 60

Query: 56  EVTSFSTLFPQYRGKSPHPTPPSALSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFG 115
           EV+SFSTLFPQYR                            +KYLQEAWPIVKGALKEFG
Sbjct: 61  EVSSFSTLFPQYR----------------------------EKYLQEAWPIVKGALKEFG 92

Query: 116 VACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKI 175
           VACELNLVEGSMTVSTTRKT+DPYII+KA ELIKLLSRSVPAPQAIKILNDEMSC IIKI
Sbjct: 93  VACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKI 152

Query: 176 GSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVE 235
           GSIIRNKERFVKRR RLLGPNLSTLKAIEILTGCYILVQGNT AAMG WKGLKQV RVVE
Sbjct: 153 GSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKGLKQVRRVVE 212

Query: 236 DCIKNVKHPVYHIKELLIKRELVKNPALAHESWDXXXXXXXXXXXXXXXXXXXXXXQYTP 295
           DCIKN+KHPVYHIKELLIKREL KNPALA+ESWD                       YTP
Sbjct: 213 DCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKPITKEKKPYTP 272

Query: 296 FPPPQQPSKIDLELESGECFMSDKKKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDI 355
           FPPPQQPSKIDLELESGE FMSDKKKSAK+WQEKLEKQS+KAEENKRKREAAFV P ED 
Sbjct: 273 FPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKREAAFVPPKEDT 332

Query: 356 ATPYESAKSIINNGEIADMXXXXXXXXXXXXXXXXQEN 393
           ATPYESAKS  NN EIADM                QEN
Sbjct: 333 ATPYESAKSTSNNDEIADMAKSLKKKAKEFRKSEAQEN 370



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,660,610
Number of extensions: 570295
Number of successful extensions: 2181
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2178
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 357
Effective length of database: 11,605,545
Effective search space: 4143179565
Effective search space used: 4143179565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)