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Os10g0452800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Rev interacting protein mis3-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.38 (0.0251) R2 : 0.396
β1 : 1.2 (0.0919) R2dD : 0.234 R2D : 0.223
β2 : 0.677 (0.0594) R2dC : 0.172 R2C : 0.165
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0241 (0.0535) R2dN8 : 0.00036 R2N8 : -0.00337
σ : 0.472
deviance : 101.44
__
_____
C
peak time of C : 12
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.57 0.45 8.31 1.58 0.684 -0.417 0.452 1.75 0.247 12.2 10.01 1446 -- --
97.24 0.459 8.32 1.34 0.689 -0.352 0.433 -- 0.221 12.2 10.01 1448 -- --
91.93 0.447 8.32 1.57 0.74 -0.407 -- 2.05 0.226 12.2 10.03 1560 -- --
97.2 0.459 8.35 1.34 0.612 -0.36 -- -- 0.148 11.7 10 1369 -- --
112.7 0.497 8.39 1.13 -- 0.402 -- 0.417 0.0269 -- 10.03 1560 -- --
100.44 0.47 8.39 1.18 0.679 -- 0.489 -- 0.0224 12.2 -- -- -- --
101.44 0.472 8.38 1.2 0.677 -- -- -- 0.0241 12 -- -- -- --
111.7 0.494 8.39 1.22 -- 0.426 -- -- 0.0497 -- 9.75 6098 -- --
137.64 0.546 8.42 -- 0.679 0.173 -- -- -0.141 11.6 30.01 760 -- --
130.31 0.533 8.4 1.18 -- -- -- -- 0.0146 -- -- -- -- --
139.32 0.552 8.41 -- 0.662 -- -- -- -0.109 11.9 -- -- -- --
137.87 0.549 8.44 -- -- 0.512 -- -- -0.147 -- 0.1085 48 -- --
166.9 0.603 8.43 -- -- -- -- -- -0.116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.68 humidity 90.0 4320 > th dose dependent rect. 2 1
3 88.54 wind 3.0 4320 < th dose dependent rect. 6 1
6 88.77 humidity 50.0 720 > th dose dependent rect. 19 2
7 88.78 temperature 15.0 720 > th dose dependent rect. 17 2
10 88.85 wind 9.0 4320 < th dose dependent rect. 6 1
12 89.06 wind 3.0 4320 < th dose independent rect. 5 3
13 89.07 radiation 1.0 1440 > th dose independent rect. 8 5
14 89.11 wind 1.0 4320 > th dose dependent rect. 6 1
18 89.20 radiation 10.0 1440 < th dose dependent rect. 12 7
19 89.20 radiation 10.0 1440 < th dose dependent rect. 12 14
20 89.20 radiation 10.0 1440 < th dose dependent rect. 12 16
22 89.21 radiation 10.0 1440 < th dose dependent rect. 12 10
24 89.22 temperature 15.0 720 > th dose independent rect. 7 8
25 89.22 radiation 1.0 720 > th dose independent rect. 7 22
28 89.23 radiation 1.0 720 > th dose independent rect. 7 12
38 89.23 radiation 10.0 1440 < th dose dependent rect. 10 9
41 89.23 radiation 10.0 1440 < th dose dependent rect. 10 18
42 89.24 wind 3.0 4320 > th dose independent rect. 5 4
45 89.24 radiation 10.0 1440 < th dose dependent rect. 10 12
46 89.24 radiation 10.0 1440 < th dose dependent rect. 10 16
63 89.28 radiation 1.0 1440 < th dose independent rect. 8 5
64 89.28 radiation 1.0 1440 < th dose dependent rect. 8 5
86 89.43 radiation 10.0 1440 < th dose dependent sin 18 NA
88 89.44 temperature 15.0 720 > th dose independent rect. 19 16
101 89.51 radiation 1.0 1440 > th dose independent rect. 8 8
105 89.55 humidity 70.0 720 > th dose independent rect. 19 2
107 89.57 radiation 1.0 1440 < th dose independent rect. 8 8
108 89.57 humidity 70.0 720 > th dose independent rect. 19 12
123 89.76 humidity 70.0 720 > th dose independent rect. 19 8
125 89.80 temperature 15.0 720 > th dose independent rect. 7 16
128 89.84 temperature 15.0 720 > th dose independent rect. 11 8
133 89.87 humidity 90.0 4320 > th dose independent rect. 2 3
134 89.87 atmosphere 1015.0 720 < th dose independent rect. 3 16
156 89.98 temperature 25.0 720 > th dose independent rect. 18 1
158 90.00 humidity 80.0 1440 < th dose independent rect. 23 15
170 90.13 humidity 80.0 1440 < th dose independent rect. 7 7
191 90.32 temperature 15.0 720 > th dose independent rect. 23 8
196 90.36 temperature 15.0 720 > th dose dependent rect. 16 8
202 90.39 radiation 10.0 1440 > th dose independent rect. 11 7
237 90.47 wind 7.0 43200 > th dose dependent rect. 18 2
250 90.57 humidity 80.0 1440 < th dose independent sin 5 NA
272 90.71 radiation 1.0 1440 < th dose independent rect. 8 11
273 90.71 radiation 1.0 1440 < th dose independent rect. 8 20
276 90.72 humidity 80.0 1440 > th dose independent rect. 24 14
277 90.72 radiation 1.0 1440 < th dose independent rect. 8 14
279 90.72 radiation 1.0 1440 < th dose independent rect. 8 18
288 90.74 humidity 80.0 1440 > th dose independent rect. 3 11
300 90.77 humidity 80.0 1440 > th dose independent rect. 5 9
302 90.78 precipitation 0.1 720 < th dose independent rect. 2 17
303 90.78 precipitation 0.1 720 < th dose dependent rect. 2 17
305 90.80 radiation 1.0 1440 < th dose independent rect. 12 4
307 90.80 radiation 10.0 1440 > th dose independent rect. 11 22
345 90.85 wind 7.0 43200 > th dose independent rect. 18 2
366 90.94 temperature 30.0 720 < th dose independent rect. 18 13
370 90.97 radiation 10.0 1440 > th dose independent sin 18 NA
385 90.99 radiation 1.0 720 < th dose independent rect. 17 8
435 91.07 humidity 90.0 4320 > th dose independent rect. 8 1
463 91.10 temperature 15.0 720 > th dose independent rect. 7 12
481 91.13 precipitation 0.1 720 < th dose independent rect. 6 23
487 91.13 precipitation 0.1 720 < th dose dependent rect. 6 23
494 91.14 atmosphere 1015.0 720 < th dose independent rect. 11 8
496 91.14 atmosphere 995.0 720 > th dose independent rect. 19 16
497 91.14 humidity 80.0 720 > th dose dependent rect. 5 1
502 91.14 humidity 80.0 30 > th dose dependent rect. 5 22
507 91.16 precipitation 0.1 720 < th dose independent rect. 7 8
511 91.16 precipitation 0.1 720 < th dose dependent rect. 7 8
515 91.17 humidity 70.0 720 > th dose independent rect. 23 8
523 91.19 temperature 30.0 720 < th dose independent rect. 18 8
524 91.19 humidity 90.0 4320 > th dose independent rect. 2 8
527 91.19 humidity 80.0 720 > th dose dependent rect. 2 14
564 91.25 atmosphere 1015.0 720 < th dose independent rect. 7 8
565 91.25 temperature 10.0 720 > th dose independent rect. 15 16
566 91.25 radiation 1.0 720 < th dose dependent rect. 17 8
577 91.28 wind 7.0 43200 > th dose dependent rect. 16 4
584 91.30 precipitation 0.1 14400 < th dose independent rect. 3 2
585 91.30 temperature 10.0 720 > th dose independent rect. 19 8
587 91.30 humidity 50.0 720 > th dose independent rect. 19 8
588 91.30 atmosphere 995.0 720 > th dose independent rect. 19 8
589 91.30 radiation 1.0 720 < th dose independent rect. 19 8
594 91.30 temperature 10.0 720 > th dose independent rect. 3 16
595 91.30 precipitation 0.1 14400 < th dose dependent rect. 3 2
598 91.30 radiation 10.0 720 < th dose dependent rect. 19 8
604 91.31 radiation 30.0 720 < th dose independent rect. 23 8
607 91.32 wind 5.0 14400 > th dose independent rect. 11 7
616 91.33 wind 9.0 43200 < th dose independent rect. 17 3
619 91.33 temperature 30.0 720 < th dose independent rect. 23 8
620 91.33 humidity 50.0 720 > th dose independent rect. 23 8
622 91.33 atmosphere 995.0 720 > th dose independent rect. 23 8
627 91.34 humidity 80.0 1440 > th dose independent sin 4 NA
636 91.35 precipitation 0.1 14400 > th dose independent rect. 3 2
654 91.37 wind 9.0 720 < th dose independent rect. 23 8
657 91.37 humidity 70.0 720 > th dose dependent rect. 24 16
660 91.38 wind 5.0 14400 < th dose independent rect. 11 7
662 91.38 radiation 1.0 720 < th dose independent rect. 4 21
669 91.40 radiation 1.0 720 > th dose independent rect. 16 3
714 91.44 precipitation 0.1 14400 > th dose dependent rect. 3 2
748 91.48 radiation 1.0 720 < th dose independent rect. 14 11
791 91.53 precipitation 0.1 720 < th dose independent rect. 7 12
799 91.53 precipitation 0.1 720 < th dose dependent rect. 7 12
802 91.54 humidity 70.0 720 > th dose dependent sin 5 NA
803 91.55 precipitation 0.1 720 < th dose independent rect. 11 8
805 91.55 precipitation 0.1 720 < th dose dependent rect. 11 8
806 91.56 radiation 10.0 1440 > th dose independent rect. 14 23
808 91.57 radiation 10.0 1440 > th dose independent no NA NA
895 91.59 radiation 10.0 1440 > th dose independent rect. 17 23
910 91.61 radiation 40.0 720 < th dose independent rect. 15 16
932 91.64 wind 5.0 14400 < th dose independent rect. 11 4
933 91.64 wind 5.0 14400 > th dose independent rect. 11 5
941 91.65 radiation 1.0 1440 < th dose independent sin 19 NA
959 91.67 temperature 30.0 720 < th dose dependent rect. 19 2