BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0711600 Os01g0711600|AK099559
         (241 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0711600  Protein of unknown function DUF778 family protein   499   e-142
Os05g0539800  Protein of unknown function DUF778 family protein   372   e-104
Os03g0799500  Protein of unknown function DUF778 family protein   249   1e-66

>Os01g0711600 Protein of unknown function DUF778 family protein
          Length = 241

 Score =  499 bits (1284), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MAPNKISSMDAGAAFDDEDASSSNSLQELWPVGEIDPKRARFPCCIVWTPLPIVSWLAPY 60
           MAPNKISSMDAGAAFDDEDASSSNSLQELWPVGEIDPKRARFPCCIVWTPLPIVSWLAPY
Sbjct: 1   MAPNKISSMDAGAAFDDEDASSSNSLQELWPVGEIDPKRARFPCCIVWTPLPIVSWLAPY 60

Query: 61  IGHAGICREDGTVLDFAGSNLVSMDNFAYGSIARYLQLDRKKCCFPVNLATHVCERSYKH 120
           IGHAGICREDGTVLDFAGSNLVSMDNFAYGSIARYLQLDRKKCCFPVNLATHVCERSYKH
Sbjct: 61  IGHAGICREDGTVLDFAGSNLVSMDNFAYGSIARYLQLDRKKCCFPVNLATHVCERSYKH 120

Query: 121 AEAGTAISWDDALQLGMRSFGHKFYNLFTCNCYSFVANCLNRLAYNGSVKWNVLNVAALV 180
           AEAGTAISWDDALQLGMRSFGHKFYNLFTCNCYSFVANCLNRLAYNGSVKWNVLNVAALV
Sbjct: 121 AEAGTAISWDDALQLGMRSFGHKFYNLFTCNCYSFVANCLNRLAYNGSVKWNVLNVAALV 180

Query: 181 WLRGQWVDKMSVVRSFFPFLTVTCVGILMAGWPFLIGMAAFSSLLIGWFVFAVYCMKDLV 240
           WLRGQWVDKMSVVRSFFPFLTVTCVGILMAGWPFLIGMAAFSSLLIGWFVFAVYCMKDLV
Sbjct: 181 WLRGQWVDKMSVVRSFFPFLTVTCVGILMAGWPFLIGMAAFSSLLIGWFVFAVYCMKDLV 240

Query: 241 C 241
           C
Sbjct: 241 C 241



>Os05g0539800 Protein of unknown function DUF778 family protein
          Length = 233

 Score =  372 bits (956), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/233 (75%), Positives = 194/233 (83%)

Query: 9   MDAGAAFDDEDASSSNSLQELWPVGEIDPKRARFPCCIVWTPLPIVSWLAPYIGHAGICR 68
           M+  AA  D   SSSN +QELWP+GE+D K  RFPCCIVWTPLP+VSWLAPYIGH GI R
Sbjct: 1   MEVEAACGDGVVSSSNEMQELWPLGEVDQKGTRFPCCIVWTPLPVVSWLAPYIGHVGIAR 60

Query: 69  EDGTVLDFAGSNLVSMDNFAYGSIARYLQLDRKKCCFPVNLATHVCERSYKHAEAGTAIS 128
           EDGTV+DFAGSN VS+D+ AYGS ARYLQLDR+KCCFP NLA HVC RSY+H+EAGTAIS
Sbjct: 61  EDGTVMDFAGSNFVSVDDLAYGSAARYLQLDRRKCCFPANLAAHVCARSYEHSEAGTAIS 120

Query: 129 WDDALQLGMRSFGHKFYNLFTCNCYSFVANCLNRLAYNGSVKWNVLNVAALVWLRGQWVD 188
           WDDALQ G R F HK YNLFTCN +SFVA+CLNRLAY GSV WNVLN+AALVWLRG+W+ 
Sbjct: 121 WDDALQSGARRFEHKCYNLFTCNSHSFVASCLNRLAYGGSVGWNVLNLAALVWLRGRWLG 180

Query: 189 KMSVVRSFFPFLTVTCVGILMAGWPFLIGMAAFSSLLIGWFVFAVYCMKDLVC 241
           KM+VVRS  PF  V CVG+LMAGW FLI MAAFSSLL+GWFV  VYC K LVC
Sbjct: 181 KMAVVRSLLPFAAVACVGVLMAGWSFLISMAAFSSLLLGWFVLGVYCFKGLVC 233



>Os03g0799500 Protein of unknown function DUF778 family protein
          Length = 204

 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 153/206 (74%), Gaps = 14/206 (6%)

Query: 35  IDPKRARFPCCIVWTPLPIVSWLAPYIGHAGICREDGTVLDFAGSNLVSMDNFAYGSIAR 94
           IDP+RARFPCCIVWTPLP++SWL P+IGH GICREDG +LDFAG N VS+DNFA+G++AR
Sbjct: 11  IDPRRARFPCCIVWTPLPLISWLIPFIGHIGICREDGVILDFAGPNFVSVDNFAFGAVAR 70

Query: 95  YLQLDRKKCCFPVNLATHVCERSYKHAEAGTAISWDDALQLGMRSFGHKFYNLFTCNCYS 154
           Y+Q++  +C              YK  E   A +WDDAL+ G++ F H+ Y+LFTCNC+S
Sbjct: 71  YIQVNSDEC--------------YKLLEPEGASTWDDALRKGVQEFQHRGYSLFTCNCHS 116

Query: 155 FVANCLNRLAYNGSVKWNVLNVAALVWLRGQWVDKMSVVRSFFPFLTVTCVGILMAGWPF 214
           FV N LNRL Y+G  KWNV+++AA+++LRG+WV   SVV++FFPF  V  +G L+ G  F
Sbjct: 117 FVVNNLNRLFYSGHDKWNVVSLAAVMFLRGRWVSTASVVKTFFPFALVITIGTLLGGATF 176

Query: 215 LIGMAAFSSLLIGWFVFAVYCMKDLV 240
           LIG+ AF++++ GWF+   YC+K LV
Sbjct: 177 LIGLLAFAAVMTGWFLVGTYCIKSLV 202



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.139    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,488,156
Number of extensions: 342754
Number of successful extensions: 940
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 939
Number of HSP's successfully gapped: 3
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)