Os01g0711600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF778 family protein.
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Os01g0711600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF778 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.96 | 0.384 | 8.6 | -0.59 | 0.604 | -2.2 | -0.327 | -0.16 | -0.0579 | 4.51 | 25.13 | 273 | -- | -- |
| 66.99 | 0.381 | 8.6 | -0.616 | 0.609 | -2.18 | -0.356 | -- | -0.0657 | 4.5 | 25.2 | 272 | -- | -- |
| 67.19 | 0.382 | 8.6 | -0.566 | 0.607 | -2.2 | -- | -0.258 | -0.0517 | 4.65 | 25.19 | 281 | -- | -- |
| 67.32 | 0.382 | 8.6 | -0.613 | 0.605 | -2.18 | -- | -- | -0.064 | 4.68 | 25.2 | 283 | -- | -- |
| 80.58 | 0.418 | 8.58 | -0.478 | -- | -2.21 | -- | -0.576 | 0.0568 | -- | 23.69 | 383 | -- | -- |
| 136.23 | 0.547 | 8.51 | -0.0544 | 0.283 | -- | -0.28 | -- | 0.38 | 4.79 | -- | -- | -- | -- |
| 136.39 | 0.547 | 8.51 | -0.0527 | 0.284 | -- | -- | -- | 0.382 | 5.16 | -- | -- | -- | -- |
| 77.87 | 0.411 | 8.61 | -0.683 | -- | -2.14 | -- | -- | -0.0584 | -- | 24.62 | 1286 | -- | -- |
| 76.23 | 0.407 | 8.58 | -- | 0.564 | -1.92 | -- | -- | 0.0492 | 4.56 | 25.2 | 258 | -- | -- |
| 140.61 | 0.554 | 8.51 | -0.0427 | -- | -- | -- | -- | 0.389 | -- | -- | -- | -- | -- |
| 136.46 | 0.546 | 8.51 | -- | 0.283 | -- | -- | -- | 0.387 | 5.17 | -- | -- | -- | -- |
| 88.14 | 0.437 | 8.57 | -- | -- | -1.87 | -- | -- | 0.132 | -- | 23.82 | 377 | -- | -- |
| 140.66 | 0.554 | 8.51 | -- | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 9 | 67.03 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 13 | 67.25 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 17 | 67.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 21 | 67.58 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 40 | 69.22 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 74 | 70.78 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 75 | 70.79 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 81 | 70.89 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 227 | 73.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 241 | 73.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 292 | 74.33 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 299 | 74.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 309 | 74.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 330 | 74.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 397 | 75.03 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 459 | 75.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 501 | 75.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 502 | 75.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 599 | 75.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 708 | 76.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |