BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0711600 Os01g0711600|AK099559
(241 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26070.1 | chr2:11105741-11106607 REVERSE LENGTH=251 305 2e-83
AT3G51040.1 | chr3:18952281-18953060 REVERSE LENGTH=232 223 1e-58
>AT2G26070.1 | chr2:11105741-11106607 REVERSE LENGTH=251
Length = 250
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 182/243 (74%), Gaps = 8/243 (3%)
Query: 6 ISSMDAGAAFDDEDASSSNSLQ--------ELWPVGEIDPKRARFPCCIVWTPLPIVSWL 57
+ MD ++D ED S S+ +LWP+ EID K+++FPCCIVWTPLP+VSWL
Sbjct: 7 VPMMDLKRSYDVEDRVVSVSIPSIIEADEADLWPLPEIDTKKSKFPCCIVWTPLPVVSWL 66
Query: 58 APYIGHAGICREDGTVLDFAGSNLVSMDNFAYGSIARYLQLDRKKCCFPVNLATHVCERS 117
AP+IGH G+CREDG +LDFAGSN +++D+FA+G ARYLQLDR KCC P N+ H C+
Sbjct: 67 APFIGHIGLCREDGVILDFAGSNFINVDDFAFGPPARYLQLDRTKCCLPPNMGGHTCKYG 126
Query: 118 YKHAEAGTAISWDDALQLGMRSFGHKFYNLFTCNCYSFVANCLNRLAYNGSVKWNVLNVA 177
+KH + GTA +WD+AL RSF HK YN+FTCNC+SFVANCLNRL Y GS++WN++NVA
Sbjct: 127 FKHTDFGTARTWDNALSSSTRSFEHKTYNIFTCNCHSFVANCLNRLCYGGSMEWNMVNVA 186
Query: 178 ALVWLRGQWVDKMSVVRSFFPFLTVTCVGILMAGWPFLIGMAAFSSLLIGWFVFAVYCMK 237
L+ ++G+W++ SVVRSF P VT +G+++ GWPFLIG+++FS LL WF+ A YC K
Sbjct: 187 ILLMIKGKWINGSSVVRSFLPCAVVTSLGVVLVGWPFLIGLSSFSLLLFAWFIIATYCFK 246
Query: 238 DLV 240
+++
Sbjct: 247 NII 249
>AT3G51040.1 | chr3:18952281-18953060 REVERSE LENGTH=232
Length = 231
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 141/210 (67%), Gaps = 4/210 (1%)
Query: 34 EIDPKRARFPCCIVWTPLPIVSWLAPYIGHAGICREDGTVLDFAGSNLVSMDNFAYGSIA 93
+IDPKR RFPCCIVWTPLP +SWL P+IGH GICREDG +LDFAG N V +DNFA+G+++
Sbjct: 21 KIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVILDFAGPNFVCVDNFAFGAVS 80
Query: 94 RYLQLDRK-KCCFPVNLATHVCERSYKHAEAG--TAISWDDALQLGMRSFGHKFYNLFTC 150
RY+Q++++ + + ER Y+ E +WDDAL+ + + H YN+ TC
Sbjct: 81 RYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTC 140
Query: 151 NCYSFVANCLNRLAYNGSVKWNVLNVAALVWLRGQWVDKMSVVRSFFPFLTVTCVGILMA 210
NC+SFVAN LNRL+ S WNV+N+A LV +G+WV+K ++V+S P L V +GIL+
Sbjct: 141 NCHSFVANNLNRLSIK-SGGWNVVNLATLVLFKGRWVNKTAIVKSLLPPLIVYTIGILLG 199
Query: 211 GWPFLIGMAAFSSLLIGWFVFAVYCMKDLV 240
GW F+ + LL GWF+ YC K L+
Sbjct: 200 GWTFIASCSILVVLLTGWFIIGTYCFKKLI 229
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.139 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,531,768
Number of extensions: 223554
Number of successful extensions: 522
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,474,633
Effective search space: 1228821785
Effective search space used: 1228821785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)