BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0711100 Os01g0711100|AK068087
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0711100 Peptidase M16, C-terminal domain containing pr... 672 0.0
AF271294 542 e-154
Os03g0212700 Similar to Cytochrome C reductase-processing p... 377 e-105
Os01g0739000 Similar to Mitochondrial processing peptidase 110 2e-24
Os05g0524300 Similar to Mitochondrial processing peptidase 101 6e-22
Os01g0191500 Similar to Mitochondrial processing peptidase 85 6e-17
Os01g0966300 Similar to Mitochondrial processing peptidase 74 1e-13
>Os01g0711100 Peptidase M16, C-terminal domain containing protein
Length = 323
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MEEVQGMMDEVIFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVV 60
MEEVQGMMDEVIFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVV
Sbjct: 1 MEEVQGMMDEVIFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVV 60
Query: 61 SAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHFAIA 120
SAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHFAIA
Sbjct: 61 SAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHFAIA 120
Query: 121 FKGSSWANPSSIPLMVIQSILGTWNRSIGVGNCSGSALARGISNGNLAESMIAFNTNYRD 180
FKGSSWANPSSIPLMVIQSILGTWNRSIGVGNCSGSALARGISNGNLAESMIAFNTNYRD
Sbjct: 121 FKGSSWANPSSIPLMVIQSILGTWNRSIGVGNCSGSALARGISNGNLAESMIAFNTNYRD 180
Query: 181 TGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLHIDGSTAVS 240
TGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLHIDGSTAVS
Sbjct: 181 TGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLHIDGSTAVS 240
Query: 241 ENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLPELSW 300
ENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLPELSW
Sbjct: 241 ENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLPELSW 300
Query: 301 FRSHTYSDDEFSSRTFLQDAQNN 323
FRSHTYSDDEFSSRTFLQDAQNN
Sbjct: 301 FRSHTYSDDEFSSRTFLQDAQNN 323
>AF271294
Length = 267
Score = 542 bits (1396), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/267 (98%), Positives = 266/267 (99%), Gaps = 1/267 (0%)
Query: 58 MVVSAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHF 117
MVVSAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHF
Sbjct: 1 MVVSAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHF 60
Query: 118 AIAFKGSSWANPSSIPLMVIQSILGTWNRSIGVGNCSGSALARGISNGNLAESMIAFNTN 177
AIAFKGSSWANPSSIPLMVIQSILGTWNRS+GVGNCSGSALARGISNGNLAE+MIAFNTN
Sbjct: 61 AIAFKGSSWANPSSIPLMVIQSILGTWNRSVGVGNCSGSALARGISNGNLAETMIAFNTN 120
Query: 178 YRD-TGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLHIDGS 236
YRD TGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLHIDGS
Sbjct: 121 YRDDTGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLHIDGS 180
Query: 237 TAVSENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLP 296
TAVS+NNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLP
Sbjct: 181 TAVSKNNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLP 240
Query: 297 ELSWFRSHTYSDDEFSSRTFLQDAQNN 323
ELSWFRSHTYSDDEFSSRTFLQDAQNN
Sbjct: 241 ELSWFRSHTYSDDEFSSRTFLQDAQNN 267
>Os03g0212700 Similar to Cytochrome C reductase-processing peptidase subunit I,
MPP subunit I, P55
Length = 533
Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/306 (57%), Positives = 228/306 (74%)
Query: 1 MEEVQGMMDEVIFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVV 60
MEEV+G +EVIFDHLHA AFQ LG ILG EN+KSI+++DL++YI THYT PRMV+
Sbjct: 224 MEEVEGQYEEVIFDHLHATAFQYTSLGRPILGSAENVKSITQEDLQKYIETHYTAPRMVI 283
Query: 61 SAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHFAIA 120
+AAGAV HD++V+ + F TDPTT LV PA FTGSEVR+ +MPL FA+A
Sbjct: 284 TAAGAVKHDDIVEMATKLFNDLPTDPTTTSMLVSTQPACFTGSEVRIIDDDMPLAQFAVA 343
Query: 121 FKGSSWANPSSIPLMVIQSILGTWNRSIGVGNCSGSALARGISNGNLAESMIAFNTNYRD 180
F G+SW +P SI LMV+QS+LG+WN+S G G GS L + ++ ++AES++AFNTNY+D
Sbjct: 344 FNGASWIDPDSIALMVMQSMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKD 403
Query: 181 TGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLHIDGSTAVS 240
TGLFG+ +A+PD L DL+ IMQE +L++ V+E +V RARNQLKS++ LH+DGSTAV
Sbjct: 404 TGLFGVYAVAKPDCLDDLAFAIMQEISKLSYRVTEEDVIRARNQLKSSIQLHLDGSTAVV 463
Query: 241 ENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLPELSW 300
E+ GRQ+L YGR +P ELFARIDAVD TV A FI D+DIA+AA+GP+ LP+ +W
Sbjct: 464 EDIGRQLLIYGRRIPIPELFARIDAVDASTVKRVANRFIFDQDIAIAAMGPIQGLPDYNW 523
Query: 301 FRSHTY 306
FR TY
Sbjct: 524 FRRRTY 529
>Os01g0739000 Similar to Mitochondrial processing peptidase
Length = 499
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 154/310 (49%), Gaps = 23/310 (7%)
Query: 1 MEEVQGMMDEV-------IFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHY 53
+E+++ + EV + + LH+A + G L ++ P I + LE++I +Y
Sbjct: 187 LEKIKAEIAEVSDNPQGLLLEALHSAGYSG-ALAKPLMAPQSAIHRLDSSILEEFIAENY 245
Query: 54 TCPRMVVSAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMP 113
T PRMV++A+G V HDE+V + D +V + E +++ G + R Q +
Sbjct: 246 TAPRMVLAASG-VEHDELVSIAEPLLS----DLPSVKRPEEPK-SVYVGGDYRC-QADSD 298
Query: 114 LTHFAIAFK--GSSWANPSSIPLMVIQSILGTWNRSIGVGNCSG---SALARGISNGNLA 168
TH A+AF+ G + ++I + V+Q ++G G G R ++N +
Sbjct: 299 KTHIALAFEVPGGWFEEKTAIIVTVLQMLMGGGGSFSAGGPGKGMHSRLYLRILNNYHQI 358
Query: 169 ESMIAFNTNYRDTGLFGICTIAQPDSLYDLSQLIMQEFRRLAF--EVSETEVARARNQLK 226
ES AFN+ Y +GLFGI P+ L E +A +V++ ++ RA+ K
Sbjct: 359 ESFSAFNSIYNHSGLFGIHATTSPNFASKAVDLAAGELLEVATPGKVTQEQLDRAKQATK 418
Query: 227 SALLLHIDGSTAVSENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIAL 286
SA+L++++ SE+ GRQ+LTYG P ++A+ + + TAK II + L
Sbjct: 419 SAVLMNLESRVVASEDIGRQILTYGERKPIEHFLKDLEAITLNDISSTAKK-IISSPLTL 477
Query: 287 AAVGPLTNLP 296
A+ G + ++P
Sbjct: 478 ASWGDVIHVP 487
>Os05g0524300 Similar to Mitochondrial processing peptidase
Length = 382
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 152/314 (48%), Gaps = 16/314 (5%)
Query: 1 MEEVQGMMDEVIFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVV 60
+ EV G ++ + LH+A + G L ++ + + LE++++ +YT PRMV+
Sbjct: 77 ISEVSGDPHGLLMEALHSAGYSG-ALAKPLMASESAVNRLDVATLEEFVSENYTAPRMVL 135
Query: 61 SAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHFAIA 120
+A+G + HDE+V + D +V + E +++ G + Q + TH A+A
Sbjct: 136 AASG-IEHDELVSVAEPLLS----DLPSVKRPEEPK-SVYVGGDYHC-QADSTSTHIALA 188
Query: 121 FK--GSSWANPSSIPLMVIQSILGTWNRSIGVGNCSGS---ALARGISNGNLAESMIAFN 175
F+ G +++ + V+Q ++G G G R ++N ES AF+
Sbjct: 189 FEVPGGWRQEKTAMIVTVLQVLMGGGGSFSTGGPGKGMHSWLYLRVLNNYGQIESFSAFS 248
Query: 176 TNYRDTGLFGICTIAQPDSLYDLSQLIMQEFRRLAF--EVSETEVARARNQLKSALLLHI 233
+ Y ++GLFGI PD + L +E +A +V++ ++ RA+ KS++L+ +
Sbjct: 249 SIYNNSGLFGIHATTNPDFVSSAVDLAARELHEVATPGKVTQEQLDRAKEATKSSVLMDL 308
Query: 234 DGSTAVSENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLT 293
+ SE+ GRQ+LTYG P ++ + + + TAK II + LA+ G +
Sbjct: 309 ESRIVASEDIGRQVLTYGERKPIEYFLKTVEEITLNDISSTAKK-IISSPLTLASWGDVI 367
Query: 294 NLPELSWFRSHTYS 307
++P R +S
Sbjct: 368 HVPSYESVRRKFHS 381
>Os01g0191500 Similar to Mitochondrial processing peptidase
Length = 505
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 27/297 (9%)
Query: 12 IFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVVSAAGAVNHDEV 71
+ + LH+ + G L ++ ++ ++ LE ++ +YT PR+V++A G V+HDE+
Sbjct: 212 LLEALHSTGYSGA-LATPLIASESSVSRLNTNVLEYFLAENYTAPRIVLAATG-VDHDEL 269
Query: 72 VDQVREFFTGFS--TDPTTVDQLVEANP-AIFTGSEVRVEQPEMPLTHFAIAFK--GSSW 126
V + T P A P + + G E R + T A+AF+ G
Sbjct: 270 VSIAEPLLSDMPGVTGP--------AKPKSTYVGGEYR-RTADSSNTDVALAFEVPGGWL 320
Query: 127 ANPSSIPLMVIQSILG-----TWNRSIGVGNCSGSALARGISNGNLAESMIAFNTNYRDT 181
+ + V+Q++LG +W R G S+L + + S+ AF + +T
Sbjct: 321 KEKEFVTVSVLQTLLGGGGTYSWGRH---GKGLHSSLNHLANEFDQIRSIAAFKDVHSNT 377
Query: 182 GLFGICTIAQPDSLYDLSQLIMQEFRRLAF--EVSETEVARARNQLKSALLLHIDGSTAV 239
G+FGI T + L +E LA +V +T++ RA+ KSA+L++++ +
Sbjct: 378 GIFGIHTSTDAAFVPKAIDLATRELTSLATPGKVDQTQLDRAKATAKSAILMNLESKASA 437
Query: 240 SENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLP 296
+E+ GRQ+L +G P L +D V + A+ II + +A+ G + N+P
Sbjct: 438 TEDMGRQILAFGERKPVEHLLKAVDGVTLKDITALAEK-IISSPLTMASHGNVLNVP 493
>Os01g0966300 Similar to Mitochondrial processing peptidase
Length = 490
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 143/303 (47%), Gaps = 16/303 (5%)
Query: 1 MEEVQGMMDEVIFDHLHAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVV 60
++E+Q + + + L+ + G L + ++ P E++ I+ ++++ ++T R+VV
Sbjct: 188 VQELQKNPERFLQESLNLVGYTG-ALANPLVAPEESLTRINGSIIQKFYHENFTADRLVV 246
Query: 61 SAAGAVNHDEVVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHFAIA 120
+A+G V+H ++D + + VE + + G + R + + +TH A+A
Sbjct: 247 AASG-VDHQYLLDVAEPLLSDWHKGSP-----VERPESKYIGGDFR-HRADSEMTHVALA 299
Query: 121 FK-GSSWANPSSIPLM-VIQSILGTWNRSIGVGNCS---GSALARGISNGNLAESMIAFN 175
F+ W +M V+Q+++G G R ++ + ES F+
Sbjct: 300 FEVPGGWLEERDATIMTVVQTLMGGGGSFSSGGPGKGMHSRLYLRVLTKYHTVESFSVFS 359
Query: 176 TNYRDTGLFGICTIAQPDSLYDLSQLIMQEFRRLAF--EVSETEVARARNQLKSALLLHI 233
+ +GLFGI D + + +E +A +V++ E+ARA+N SA+L+++
Sbjct: 360 NAFDRSGLFGIYLTTPSDFVAKAVDIATKELIAIATPGQVTDIELARAKNSTISAVLMNL 419
Query: 234 DGSTAVSENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLT 293
+ V+E+ GRQ+LTYG P +D + D + AK ++ +A+ G +
Sbjct: 420 ESRVIVAEDIGRQILTYGCRKPVDHFLQCMDEMTLDDITAFAKK-MLSSPPTMASWGDVD 478
Query: 294 NLP 296
+P
Sbjct: 479 KVP 481
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,379,821
Number of extensions: 398507
Number of successful extensions: 805
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 7
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)