Os05g0524300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mitochondrial processing peptidase.
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Os05g0524300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mitochondrial processing peptidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.35 | 0.346 | 9.77 | 1.34 | 0.882 | 1.9 | -0.921 | 1.47 | -0.308 | 21.3 | 19.33 | 6231 | -- | -- |
| 56.34 | 0.35 | 9.7 | 1.58 | 0.896 | 1.62 | -0.949 | -- | -0.251 | 21.2 | 19.3 | 7645 | -- | -- |
| 57.32 | 0.353 | 9.77 | 1.36 | 0.884 | 1.89 | -- | 1.46 | -0.304 | 21.2 | 19.37 | 6178 | -- | -- |
| 59.47 | 0.359 | 9.7 | 1.56 | 0.886 | 1.58 | -- | -- | -0.257 | 21.2 | 19.36 | 7618 | -- | -- |
| 101.3 | 0.469 | 9.74 | 1.37 | -- | 1.83 | -- | 1.31 | -0.309 | -- | 19.3 | 5868 | -- | -- |
| 89.77 | 0.444 | 9.8 | 0.438 | 0.862 | -- | -0.974 | -- | -0.68 | 21.3 | -- | -- | -- | -- |
| 93.11 | 0.452 | 9.8 | 0.475 | 0.87 | -- | -- | -- | -0.678 | 21.1 | -- | -- | -- | -- |
| 102.95 | 0.473 | 9.7 | 1.51 | -- | 1.48 | -- | -- | -0.287 | -- | 19.5 | 5874 | -- | -- |
| 86.66 | 0.434 | 9.78 | -- | 0.918 | 0.62 | -- | -- | -0.518 | 20.8 | 22.9 | 6073 | -- | -- |
| 136.9 | 0.547 | 9.78 | 0.477 | -- | -- | -- | -- | -0.682 | -- | -- | -- | -- | -- |
| 99.05 | 0.466 | 9.82 | -- | 0.87 | -- | -- | -- | -0.731 | 21.2 | -- | -- | -- | -- |
| 118.31 | 0.508 | 9.75 | -- | -- | 0.587 | -- | -- | -0.57 | -- | 22.4 | 2936 | -- | -- |
| 142.9 | 0.558 | 9.79 | -- | -- | -- | -- | -- | -0.735 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.19 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 3 | 55.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 56 | 55.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 59 | 55.61 | temperature | 20 | 43200 | < th | dose dependent | sin | 4 | NA |
| 141 | 55.84 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 144 | 55.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 150 | 55.86 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 151 | 55.86 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 163 | 55.87 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 172 | 55.88 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 20 |
| 174 | 55.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 216 | 55.90 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 233 | 55.91 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 287 | 55.93 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 288 | 55.93 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 330 | 55.95 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 335 | 55.95 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 341 | 55.95 | temperature | 20 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 344 | 55.96 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 354 | 55.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 368 | 55.97 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 21 |
| 394 | 55.98 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 402 | 55.99 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 417 | 55.99 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 445 | 56.00 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 462 | 56.01 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 15 | NA |
| 463 | 56.01 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 12 | NA |
| 466 | 56.01 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 539 | 56.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 554 | 56.03 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 6 | 11 |
| 597 | 56.05 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 606 | 56.05 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 629 | 56.05 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 671 | 56.06 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 748 | 56.08 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 763 | 56.08 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 0 | NA |