Os01g0191500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mitochondrial processing peptidase.
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Os01g0191500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mitochondrial processing peptidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.88 | 0.199 | 12.3 | -0.0572 | 0.177 | 0.613 | -0.491 | 0.896 | -0.209 | 7.29 | 23.17 | 351 | -- | -- |
| 18.6 | 0.201 | 12.3 | 0.0444 | 0.171 | 0.443 | -0.371 | -- | -0.182 | 7.19 | 24.75 | 409 | -- | -- |
| 18.47 | 0.2 | 12.3 | -0.0374 | 0.186 | 0.602 | -- | 0.729 | -0.201 | 7.52 | 23.19 | 305 | -- | -- |
| 18.89 | 0.202 | 12.3 | 0.0378 | 0.175 | 0.438 | -- | -- | -0.175 | 7.44 | 24.83 | 310 | -- | -- |
| 19.99 | 0.208 | 12.3 | -0.0323 | -- | 0.535 | -- | 0.54 | -0.198 | -- | 25.42 | 363 | -- | -- |
| 21.32 | 0.216 | 12.3 | -0.0668 | 0.216 | -- | -0.359 | -- | -0.261 | 7.01 | -- | -- | -- | -- |
| 21.65 | 0.218 | 12.3 | -0.0742 | 0.217 | -- | -- | -- | -0.261 | 6.75 | -- | -- | -- | -- |
| 20.09 | 0.209 | 12.3 | 0.0523 | -- | 0.484 | -- | -- | -0.15 | -- | 26.3 | 463 | -- | -- |
| 18.92 | 0.203 | 12.3 | -- | 0.175 | 0.423 | -- | -- | -0.182 | 7.39 | 24.85 | 310 | -- | -- |
| 24.1 | 0.229 | 12.3 | -0.0693 | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
| 21.79 | 0.218 | 12.3 | -- | 0.216 | -- | -- | -- | -0.252 | 6.77 | -- | -- | -- | -- |
| 20.17 | 0.209 | 12.3 | -- | -- | 0.472 | -- | -- | -0.159 | -- | 26.45 | 424 | -- | -- |
| 24.23 | 0.23 | 12.3 | -- | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 16.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 3 | 16.91 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 4 | 16.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 5 | 16.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 6 | 16.94 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 7 | 17.02 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 9 | 17.14 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 12 | 17.24 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 13 | 17.30 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 16 | 17.40 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 19 | 17.49 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 22 | 17 |
| 25 | 17.52 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 38 | 17.59 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 44 | 17.61 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 47 | 17.62 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 23 | 16 |
| 56 | 17.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 59 | 17.65 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 23 | 13 |
| 60 | 17.65 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 61 | 17.65 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 68 | 17.66 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 71 | 17.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 72 | 17.66 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 73 | 17.66 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 76 | 17.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 79 | 17.68 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 1 | 14 |
| 85 | 17.70 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 86 | 17.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 87 | 17.70 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 1 | 11 |
| 91 | 17.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 102 | 17.71 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 103 | 17.72 | humidity | 80.0 | 4320 | < th | dose independent | sin | 5 | NA |
| 118 | 17.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 119 | 17.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 121 | 17.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 129 | 17.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 130 | 17.75 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 132 | 17.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 139 | 17.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 141 | 17.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 155 | 17.77 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 182 | 17.80 | humidity | 80.0 | 4320 | > th | dose independent | sin | 5 | NA |
| 200 | 17.81 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 224 | 17.82 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 12 |
| 233 | 17.83 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 268 | 17.86 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 269 | 17.86 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 295 | 17.87 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 300 | 17.88 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 349 | 17.91 | temperature | 25.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 359 | 17.92 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 424 | 17.95 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 451 | 17.96 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 488 | 17.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 14 |
| 504 | 17.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 14 |
| 524 | 17.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 14 |
| 528 | 18.00 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 545 | 18.00 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 593 | 18.03 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 669 | 18.05 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 686 | 18.05 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 696 | 18.06 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 697 | 18.06 | humidity | 70.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 727 | 18.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 739 | 18.08 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 747 | 18.08 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 799 | 18.09 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 800 | 18.09 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 814 | 18.10 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 6 | NA |
| 887 | 18.12 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 915 | 18.14 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 963 | 18.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 966 | 18.15 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 992 | 18.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 11 |