BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0709400 Os01g0709400|AK121006
         (418 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0709400  Survival protein SurE family protein                715   0.0  
Os07g0204500  Survival protein SurE family protein                191   1e-48

>Os01g0709400 Survival protein SurE family protein
          Length = 418

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/418 (86%), Positives = 362/418 (86%)

Query: 1   MAASSGDDAPRPNPLPSALVSNLQSVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAD 60
           MAASSGDDAPRPNPLPSALVSNLQSVL                              VAD
Sbjct: 1   MAASSGDDAPRPNPLPSALVSNLQSVLAARRPPPPAAEEAGAEAPAPEAAESSGAAPVAD 60

Query: 61  EGPAKPAVLLTCAGGIRAPGLAALVDSLVAGGRCDVHVCAPESDKPACGYSITIRETITA 120
           EGPAKPAVLLTCAGGIRAPGLAALVDSLVAGGRCDVHVCAPESDKPACGYSITIRETITA
Sbjct: 61  EGPAKPAVLLTCAGGIRAPGLAALVDSLVAGGRCDVHVCAPESDKPACGYSITIRETITA 120

Query: 121 TSVDFKGAKAFEISGTPVDCVSLALSGRLFSWSAPALVISGINAGANCGYEMFHSSAIAA 180
           TSVDFKGAKAFEISGTPVDCVSLALSGRLFSWSAPALVISGINAGANCGYEMFHSSAIAA
Sbjct: 121 TSVDFKGAKAFEISGTPVDCVSLALSGRLFSWSAPALVISGINAGANCGYEMFHSSAIAA 180

Query: 181 AREALLYDVPSIAISLNWXXXXXXXXXXXXAAEVCLPLIHAALEGVEKGTFLRGCLLNIG 240
           AREALLYDVPSIAISLNW            AAEVCLPLIHAALEGVEKGTFLRGCLLNIG
Sbjct: 181 AREALLYDVPSIAISLNWKKDESKDSDFKDAAEVCLPLIHAALEGVEKGTFLRGCLLNIG 240

Query: 241 VPSSPTTNKGFKLTKQSIYRPAQSWEGVSTSRPTPATHFMGMHQSLGIQLAQLGKDXXXX 300
           VPSSPTTNKGFKLTKQSIYRPAQSWEGVSTSRPTPATHFMGMHQSLGIQLAQLGKD    
Sbjct: 241 VPSSPTTNKGFKLTKQSIYRPAQSWEGVSTSRPTPATHFMGMHQSLGIQLAQLGKDASAA 300

Query: 301 XXXXXXXXXXKIVEVESVASTGKAEAREVVKKLFRAEFTEKQHECLDEDIDLRALENGFI 360
                     KIVEVESVASTGKAEAREVVKKLFRAEFTEKQHECLDEDIDLRALENGFI
Sbjct: 301 GAARRINAQRKIVEVESVASTGKAEAREVVKKLFRAEFTEKQHECLDEDIDLRALENGFI 360

Query: 361 SVTPLNIHGNVAPETGAPASDWLSVAVGLDKAKEDSVVTAEEQDAPAVAEEKEAPSAT 418
           SVTPLNIHGNVAPETGAPASDWLSVAVGLDKAKEDSVVTAEEQDAPAVAEEKEAPSAT
Sbjct: 361 SVTPLNIHGNVAPETGAPASDWLSVAVGLDKAKEDSVVTAEEQDAPAVAEEKEAPSAT 418



>Os07g0204500 Survival protein SurE family protein
          Length = 305

 Score =  191 bits (484), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 30/300 (10%)

Query: 66  PAVLLTCAGGIRAPGLAALVDSLVAGGRCDVHVCAPESDKPACGYSITIRETITATSVDF 125
           P VL+T   GI APGL  LV  LVA  R  V VCAP++D+    +SIT R  +    VD 
Sbjct: 15  PVVLVTNDDGIDAPGLRFLVGQLVAARRYRVLVCAPDTDRSGVSHSITWRPALRCKRVDI 74

Query: 126 KGAKAFEISGTPVDCVSLALSGRLFSWSAPALVISGINAGANCGYEMFHSSAIAAAREAL 185
            GA AF  SGTP DC SL +SG+LF    P L ISGIN G NCG  + +S  +  AREA 
Sbjct: 75  DGATAFAASGTPADCASLGISGKLFDGLVPDLAISGINVGNNCGCHVIYSGTVGGAREAF 134

Query: 186 LYDVPSIAISLNWXXXXXXXXXXXXAAEVCLPLIHAALEGVEKGTFLRGCLLNIGVPSSP 245
           LY +PS+A+S +W            AAEV +PLI+  +  ++ GT+ +G  LNI +P+  
Sbjct: 135 LYGIPSLAMSYDWVASQSSVNDLKVAAEVVMPLINNVMAEIKNGTYPQGSFLNIDIPTDA 194

Query: 246 TTNKGFKLTKQSIYRPAQSWEGVSTSRPTPATHFMGMHQSLGIQLAQLGKDXXXXXXXXX 305
             +KG+K+TKQ  Y     WE     +P   ++          Q A +  D         
Sbjct: 195 AHHKGYKITKQGRYMARIGWEQTVYKKPAVESY----------QTANMDVDS-------- 236

Query: 306 XXXXXKIVEVESVASTGKAEAREVVKKLFRAEFTEKQHECLDEDIDLRALENGFISVTPL 365
                   E +S   T         + L R  + E++     +DID + L +G+I+VTPL
Sbjct: 237 --------EKDSEVDTSSENDLLFKRVLVRRSYDEEEG----DDIDHKCLVDGYITVTPL 284



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,242,496
Number of extensions: 519197
Number of successful extensions: 977
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 975
Number of HSP's successfully gapped: 2
Length of query: 418
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 315
Effective length of database: 11,657,759
Effective search space: 3672194085
Effective search space used: 3672194085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)