Os01g0709400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Survival protein SurE family protein.
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Os01g0709400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Survival protein SurE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.3 | 0.446 | 5.56 | -0.634 | 0.837 | 1.06 | 0.549 | 0.19 | -0.215 | 10.6 | 24.5 | 10 | -- | -- |
| 90.31 | 0.446 | 5.56 | -0.606 | 0.838 | 1.04 | 0.495 | -- | -0.21 | 10.5 | 24.5 | 10 | -- | -- |
| 91.24 | 0.448 | 5.56 | -0.558 | 0.833 | 1.02 | -- | -0.211 | -0.203 | 10.5 | 24.5 | 10 | -- | -- |
| 91.31 | 0.448 | 5.56 | -0.587 | 0.835 | 1.04 | -- | -- | -0.209 | 10.5 | 24.5 | 10 | -- | -- |
| 116.1 | 0.502 | 5.56 | -0.532 | -- | 1.09 | -- | -0.0479 | -0.17 | -- | 30.7 | 785 | -- | -- |
| 106.24 | 0.483 | 5.61 | -0.847 | 0.696 | -- | 0.503 | -- | -0.395 | 9.93 | -- | -- | -- | -- |
| 107.22 | 0.485 | 5.6 | -0.828 | 0.695 | -- | -- | -- | -0.395 | 9.88 | -- | -- | -- | -- |
| 115.69 | 0.501 | 5.58 | -0.538 | -- | 1.14 | -- | -- | -0.218 | -- | 44.22 | 792 | -- | -- |
| 99.59 | 0.467 | 5.54 | -- | 0.872 | 1.27 | -- | -- | -0.109 | 10.7 | 24.5 | 10 | -- | -- |
| 136.14 | 0.545 | 5.62 | -0.835 | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
| 125.28 | 0.524 | 5.58 | -- | 0.698 | -- | -- | -- | -0.302 | 9.97 | -- | -- | -- | -- |
| 122.52 | 0.516 | 5.56 | -- | -- | 1.34 | -- | -- | -0.132 | -- | 49.74 | 806 | -- | -- |
| 154.55 | 0.58 | 5.6 | -- | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 16 |
| 3 | 83.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 4 | 83.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 7 | 83.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 8 | 83.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 13 | 83.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 26 | 83.98 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 70 | 85.46 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 6 |
| 72 | 85.47 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 74 | 85.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 79 | 85.68 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 102 | 86.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 123 | 86.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 128 | 86.56 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 174 | 87.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 11 |
| 203 | 87.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 209 | 87.43 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 225 | 87.71 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 233 | 87.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 14 |
| 248 | 87.87 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 265 | 88.02 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 7 |
| 302 | 88.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 310 | 88.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 342 | 88.48 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 17 |
| 383 | 88.64 | radiation | 20 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 385 | 88.68 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 14 |
| 391 | 88.71 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 402 | 88.75 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 419 | 88.84 | radiation | 20 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 437 | 88.91 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 438 | 88.92 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 453 | 88.95 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |
| 474 | 89.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 481 | 89.03 | radiation | 10 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 501 | 89.12 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 506 | 89.14 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 14 |
| 518 | 89.19 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 529 | 89.20 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 14 |
| 714 | 89.61 | radiation | 20 | 43200 | > th | dose independent | sin | 9 | NA |
| 729 | 89.64 | radiation | 20 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 751 | 89.66 | radiation | 40 | 43200 | > th | dose independent | sin | 9 | NA |
| 866 | 89.77 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 880 | 89.79 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 12 |
| 973 | 89.90 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 1000 | 89.92 | radiation | 40 | 43200 | < th | dose dependent | rect. | 3 | 9 |