BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0709400 Os01g0709400|AK121006
         (418 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72880.2  | chr1:27423678-27425928 REVERSE LENGTH=386          339   2e-93
AT4G14930.1  | chr4:8538831-8541205 FORWARD LENGTH=316            173   1e-43

>AT1G72880.2 | chr1:27423678-27425928 REVERSE LENGTH=386
          Length = 385

 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/384 (46%), Positives = 236/384 (61%), Gaps = 5/384 (1%)

Query: 11  RPNPLPSALVSNLQSVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADE--GPAKPAV 68
           + N L +ALVSNLQ VL                                +E    ++P V
Sbjct: 4   KNNGLSAALVSNLQDVLSKRKVGNEEKVGSDGSAEEAPSTSDSVDVASVEEEIDDSRPIV 63

Query: 69  LLTCAGGIRAPGLAALVDSLVAGGRCDVHVCAPESDKPACGYSITIRETITATSVDFKGA 128
           L+T   GI +PGL +LV++LV  G  +VHVCAP++DK A  +S T  ETI  +SV  KGA
Sbjct: 64  LVTNGDGIDSPGLVSLVEALVLEGLYNVHVCAPQTDKSASAHSTTPGETIAVSSVKLKGA 123

Query: 129 KAFEISGTPVDCVSLALSGRLFSWSAPALVISGINAGANCGYEMFHSSAIAAAREALLYD 188
            AFE+SGTPVDC+SL LSG LF+WS P LVISGIN G++CG++MF+S A+A  REAL+  
Sbjct: 124 TAFEVSGTPVDCISLGLSGALFAWSKPILVISGINQGSSCGHQMFYSGAVAGGREALISG 183

Query: 189 VPSIAISLNWXXXXXXXXXXXXAAEVCLPLIHAALEGVEKGTFLRGCLLNIGVPSSPTTN 248
           VPS++ISLNW            A  VCLPLI+A +  + KG F + C LNI +P+SP++N
Sbjct: 184 VPSLSISLNWKKNESQESHFKDAVGVCLPLINATIRDIAKGVFPKDCSLNIEIPTSPSSN 243

Query: 249 KGFKLTKQSIYRPAQSWEGVSTSRPTPATHFMGMHQSLGIQLAQLGKDXXXXXXXXXXXX 308
           KGFK+TKQS++R   SW+ VS +R   A +FM   QSLG QLAQLG+D            
Sbjct: 244 KGFKVTKQSMWRQYPSWQAVSANRHPGAGNFMSNQQSLGAQLAQLGRDASAAGAARRFTT 303

Query: 309 XXK-IVEVESVASTGKAEAREVVKKLFRAEFTEKQHECLDEDIDLRALENGFISVTPLNI 367
             K IVE+ESV   GK + R  VKK FR EF  K+ E  DED+D++ALE+GF+SVTP ++
Sbjct: 304 QKKSIVEIESVGVAGKTDTR--VKKFFRLEFLAKEQEHTDEDLDVKALEDGFVSVTPFSL 361

Query: 368 HGNVAPETGAPASDWLSVAVGLDK 391
                 ET A AS+W+S A+  D+
Sbjct: 362 LPKTDSETQAAASEWISKALNSDQ 385



>AT4G14930.1 | chr4:8538831-8541205 FORWARD LENGTH=316
          Length = 315

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 152/321 (47%), Gaps = 33/321 (10%)

Query: 65  KPAVLLTCAGGIRAPGLAALVDSLVAGGRCDVHVCAPESDKPACGYSITIRETITATSVD 124
           +P +++T   GI APGL +LV  LV+    DV VCAP+S+K A  +SI     +TA  V+
Sbjct: 13  RPIIMVTNDDGIDAPGLRSLVRVLVSTNLYDVRVCAPDSEKSAVSHSIIWSRPLTAKRVE 72

Query: 125 FKGAKAFEISGTPVDCVSLALSGRLFSWSAPALVISGINAGANCGYEMFHSSAIAAAREA 184
             GA A+ + GTP DC  L LS  LF  S P LV+SGIN G+NCGY + +S  +A AREA
Sbjct: 73  IDGATAYSVDGTPADCTGLGLSEALFP-SRPDLVLSGINVGSNCGYNIVYSGTVAGAREA 131

Query: 185 LLYDVPSIAIS--LNWXXXXXXXXXXXXAAEVCLPLIHAALEGVEKGTFLRGCLLNIGVP 242
            LYDVPS +IS   +W            +A+ CLP+I+  L  ++  T    C LNI +P
Sbjct: 132 FLYDVPSASISYDFDWKRGEMNANDFALSAQACLPIINGILGAIKNKTHPMQCFLNIDLP 191

Query: 243 SSPTTNKGFKLTKQSIYRPAQSWEGVSTSRPTPATHFMGMHQSLGIQLAQLGKDXXXXXX 302
           +    +KG+KLT+Q        W  V      P              L+ +  D      
Sbjct: 192 TDIANHKGYKLTRQGKSMGKMGWRQVEEEAQGPK------------MLSTMTMDTESG-- 237

Query: 303 XXXXXXXXKIVEVESVASTGKAEAREVVKKLFRAEFTEKQHECLDEDIDLRALENGFISV 362
                    +V  E+  S    +   + K+  RA  +E       E  D   L+ GFI+V
Sbjct: 238 ---------VVSSENDTSAHAGKDSRLFKRELRASISE-------EGSDSHYLKEGFITV 281

Query: 363 TPLNIHGNVAPETGAPASDWL 383
           TPL        +      +WL
Sbjct: 282 TPLGALSQTDVDCQNYYKEWL 302



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,861,334
Number of extensions: 291207
Number of successful extensions: 522
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 2
Length of query: 418
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 317
Effective length of database: 8,337,553
Effective search space: 2643004301
Effective search space used: 2643004301
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)