Os07g0204500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Survival protein SurE family protein.
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Os07g0204500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Survival protein SurE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.44 | 0.306 | 10.1 | -1.6 | 0.0534 | 0.619 | 0.377 | -1.06 | -0.539 | 20.1 | 10.12 | 297 | -- | -- |
| 43.17 | 0.306 | 10.1 | -1.44 | 0.0167 | 0.641 | 0.329 | -- | -0.506 | 21 | 14.22 | 333 | -- | -- |
| 42.61 | 0.304 | 10.1 | -1.59 | 0.101 | 0.56 | -- | -0.947 | -0.531 | 17.5 | 14.27 | 296 | -- | -- |
| 43.08 | 0.306 | 10.1 | -1.43 | 0.113 | 0.526 | -- | -- | -0.487 | 15.9 | 3.388 | 400 | -- | -- |
| 42.98 | 0.305 | 10.1 | -1.58 | -- | 0.636 | -- | -0.826 | -0.534 | -- | 12.4 | 309 | -- | -- |
| 46.19 | 0.319 | 10 | -1.31 | 0.252 | -- | -0.111 | -- | -0.407 | 16.8 | -- | -- | -- | -- |
| 46.22 | 0.318 | 10 | -1.31 | 0.253 | -- | -- | -- | -0.408 | 16.9 | -- | -- | -- | -- |
| 43.52 | 0.307 | 10.1 | -1.45 | -- | 0.637 | -- | -- | -0.501 | -- | 9.193 | 333 | -- | -- |
| 60.11 | 0.361 | 9.95 | -- | 0.247 | -0.884 | -- | -- | 0.019 | 17.3 | 14.5 | 47520 | -- | -- |
| 49.58 | 0.329 | 10 | -1.32 | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
| 91.65 | 0.448 | 10 | -- | 0.276 | -- | -- | -- | -0.261 | 16.8 | -- | -- | -- | -- |
| 63.31 | 0.371 | 9.94 | -- | -- | -0.892 | -- | -- | 0.0129 | -- | 14.55 | 47520 | -- | -- |
| 95.69 | 0.457 | 10 | -- | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 4 | 40.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 5 | 40.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 14 | 41.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 18 |
| 21 | 41.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 25 | 41.15 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 27 | 41.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 28 | 41.17 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 31 | 41.18 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 40 | 41.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 44 | 41.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 49 | 41.28 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 63 | 41.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 69 | 41.31 | temperature | 15 | 270 | > th | dose dependent | sin | 2 | NA |
| 71 | 41.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 90 | 41.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 114 | 41.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 124 | 41.45 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 8 |
| 151 | 41.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 158 | 41.53 | temperature | 10 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 238 | 41.70 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 19 |
| 265 | 41.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 267 | 41.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 271 | 41.74 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 285 | 41.77 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 287 | 41.77 | atmosphere | 1010 | 30 | < th | dose dependent | sin | 18 | NA |
| 294 | 41.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 300 | 41.78 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 318 | 41.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 394 | 41.89 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 1 |
| 413 | 41.91 | temperature | 15 | 10 | > th | dose dependent | sin | 0 | NA |
| 414 | 41.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 438 | 41.92 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 468 | 41.96 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 14 |
| 495 | 41.98 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 17 |
| 524 | 42.01 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |
| 532 | 42.02 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 7 |
| 571 | 42.04 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 21 |
| 574 | 42.04 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 607 | 42.07 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 778 | 42.19 | temperature | 15 | 30 | > th | dose dependent | rect. | 2 | 14 |
| 797 | 42.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 813 | 42.21 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 848 | 42.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 925 | 42.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 928 | 42.29 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 13 |
| 960 | 42.30 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 977 | 42.31 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 14 |