BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0707300 Os01g0707300|AK104463
         (221 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0707300  Similar to Vesicle transport v-SNARE 13 (AtVTI...   407   e-114
Os01g0560200  Similar to Vesicle transport v-SNARE 13 (AtVTI...   295   1e-80
Os01g0560350  Similar to Vesicle transport v-SNARE 13 (AtVTI...   100   6e-22

>Os01g0707300 Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle
           transport v-SNARE protein VTI13) (Vesicle soluble NSF
           attachment protein receptor 13)
          Length = 221

 Score =  407 bits (1047), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/221 (92%), Positives = 204/221 (92%)

Query: 1   MSEVFEGYERQYCEVSASLFRKCTTASALDGEKKKQKLSEIQSGVEEAESLIRKMDLEAR 60
           MSEVFEGYERQYCEVSASLFRKCTTASALDGEKKKQKLSEIQSGVEEAESLIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCEVSASLFRKCTTASALDGEKKKQKLSEIQSGVEEAESLIRKMDLEAR 60

Query: 61  SLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLADTLAASTDQR 120
           SLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLADTLAASTDQR
Sbjct: 61  SLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLADTLAASTDQR 120

Query: 121 GRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNVG 180
           GRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNVG
Sbjct: 121 GRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNVG 180

Query: 181 KSKKILAAMSKRMDRNKWXXXXXXXXXXXXXXXXXYFKLAY 221
           KSKKILAAMSKRMDRNKW                 YFKLAY
Sbjct: 181 KSKKILAAMSKRMDRNKWIIGGIIAALVLAILLILYFKLAY 221



>Os01g0560200 Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle
           transport v-SNARE protein VTI13) (Vesicle soluble NSF
           attachment protein receptor 13)
          Length = 221

 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/221 (63%), Positives = 175/221 (79%)

Query: 1   MSEVFEGYERQYCEVSASLFRKCTTASALDGEKKKQKLSEIQSGVEEAESLIRKMDLEAR 60
           M++VFEGYERQYCE+SASL RKCT ASAL GEK KQK SEI+SG++ AE+LI+KMDLEAR
Sbjct: 1   MADVFEGYERQYCEISASLARKCTAASALQGEKLKQKASEIKSGIDGAEALIKKMDLEAR 60

Query: 61  SLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLADTLAASTDQR 120
           + QPSV+AGLLAKLREYKSDLNNLK  LKR++  NA+Q +REELLESG+A+TL  S DQ+
Sbjct: 61  NQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAETLGVSADQK 120

Query: 121 GRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNVG 180
            RL+  TE+ N++ D+I++S RT+LETE+LGVS+LQDLHQQR+ L+HAH TL  VDDN+G
Sbjct: 121 SRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNIG 180

Query: 181 KSKKILAAMSKRMDRNKWXXXXXXXXXXXXXXXXXYFKLAY 221
           KS++I+ AM +RMDRNKW                 YFK  +
Sbjct: 181 KSRRIMGAMVRRMDRNKWIIGFIIALLVLVILVILYFKFVH 221



>Os01g0560350 Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle
           transport v-SNARE protein VTI13) (Vesicle soluble NSF
           attachment protein receptor 13)
          Length = 167

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 59/74 (79%), Gaps = 3/74 (4%)

Query: 125 MTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNVGKSKK 184
           M TE    + D I++S+RT+LETE++GV +LQDLHQQR  L+HAH  LH VDDN+GKS++
Sbjct: 1   MATE---HTIDMIRDSKRTMLETEDIGVFLLQDLHQQRGRLIHAHDILHNVDDNIGKSRR 57

Query: 185 ILAAMSKRMDRNKW 198
           I+ AM +RMDRNKW
Sbjct: 58  IIGAMVRRMDRNKW 71



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.126    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,371,883
Number of extensions: 181581
Number of successful extensions: 852
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 124
Effective length of database: 11,971,043
Effective search space: 1484409332
Effective search space used: 1484409332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)