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Os01g0707300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.014) R2 : 0.0816
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.187 (0.0294) R2dN8 : 0.105 R2N8 : 0.0816
σ : 0.263
deviance : 31.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.59 0.197 13.8 0.0629 0.0365 0.637 0.0946 0.167 0.228 13.2 45.29 221 -- --
17.55 0.195 13.8 0.0672 0.0486 0.625 0.00444 -- 0.227 12.7 42.05 206 -- --
17.59 0.195 13.8 0.0598 0.0236 0.633 -- 0.141 0.226 12.6 58.36 208 -- --
17.55 0.195 13.8 0.0669 0.0487 0.625 -- -- 0.226 12.9 42.03 206 -- --
17.61 0.195 13.8 0.0579 -- 0.612 -- 0.138 0.221 -- 58.52 208 -- --
22.7 0.223 13.8 0.0373 0.386 -- 0.0355 -- 0.184 1.97 -- -- -- --
22.71 0.223 13.8 0.0362 0.386 -- -- -- 0.184 1.97 -- -- -- --
17.6 0.195 13.8 0.0633 -- 0.59 -- -- 0.225 -- 44.15 207 -- --
17.67 0.196 13.8 -- 0.0413 0.623 -- -- 0.219 12.7 43.09 206 -- --
31.67 0.263 13.8 0.0522 -- -- -- -- 0.193 -- -- -- -- --
22.74 0.223 13.8 -- 0.387 -- -- -- 0.18 1.97 -- -- -- --
17.71 0.196 13.8 -- -- 0.596 -- -- 0.222 -- 45.21 207 -- --
31.75 0.263 13.8 -- -- -- -- -- 0.187 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.65 wind 1.0 43200 < th dose dependent rect. 2 6
3 16.81 wind 1.0 43200 < th dose independent rect. 2 5
5 16.89 wind 1.0 43200 < th dose independent rect. 2 3
7 16.93 wind 1.0 14400 > th dose independent rect. 2 1
10 17.02 wind 1.0 43200 > th dose independent rect. 2 5
16 17.08 wind 1.0 43200 > th dose independent rect. 10 1
18 17.11 radiation 40.0 270 < th dose dependent rect. 9 23
24 17.20 radiation 30.0 270 < th dose dependent rect. 4 13
29 17.24 radiation 20.0 270 < th dose independent rect. 9 23
30 17.26 radiation 1.0 270 > th dose dependent rect. 15 23
31 17.26 radiation 40.0 270 < th dose dependent rect. 20 23
32 17.28 wind 1.0 43200 < th dose independent rect. 10 1
33 17.28 radiation 40.0 270 < th dose dependent sin 2 NA
35 17.29 radiation 10.0 14400 > th dose independent rect. 6 1
56 17.35 humidity 90.0 43200 < th dose independent rect. 10 1
58 17.36 wind 5.0 43200 > th dose independent rect. 7 2
60 17.37 radiation 20.0 270 < th dose independent rect. 3 13
66 17.38 radiation 1.0 270 > th dose dependent sin 3 NA
69 17.39 wind 5.0 43200 < th dose independent rect. 7 2
80 17.42 humidity 90.0 43200 > th dose dependent rect. 9 2
85 17.44 temperature 25.0 43200 < th dose independent rect. 10 3
89 17.45 temperature 25.0 43200 < th dose independent rect. 12 1
90 17.45 temperature 25.0 43200 > th dose independent rect. 10 3
95 17.46 temperature 25.0 43200 > th dose independent rect. 12 1
96 17.46 temperature 20.0 43200 > th dose independent rect. 21 1
105 17.47 precipitation 0.1 43200 > th dose independent rect. 14 5
108 17.48 temperature 20.0 43200 < th dose independent rect. 21 1
118 17.49 precipitation 0.1 43200 < th dose independent rect. 14 5
120 17.49 precipitation 0.1 43200 < th dose dependent rect. 14 5
123 17.50 humidity 90.0 43200 > th dose independent rect. 10 1
136 17.52 wind 3.0 43200 > th dose dependent rect. 7 2
141 17.53 temperature 25.0 4320 > th dose independent rect. 6 1
149 17.53 wind 5.0 43200 > th dose independent rect. 4 6
154 17.53 precipitation 0.1 43200 > th dose dependent rect. 12 7
169 17.55 radiation 20.0 270 < th dose independent rect. 20 23
185 17.57 humidity 90.0 43200 > th dose independent rect. 9 4
214 17.60 wind 5.0 43200 < th dose independent rect. 4 6
237 17.61 precipitation 0.1 43200 > th dose dependent rect. 13 10
238 17.62 wind 3.0 14400 > th dose independent rect. 13 1
242 17.62 precipitation 0.1 43200 > th dose independent rect. 16 6
253 17.63 temperature 25.0 4320 < th dose independent rect. 6 1
259 17.63 humidity 80.0 43200 > th dose dependent rect. 12 1
270 17.64 precipitation 0.1 43200 < th dose independent rect. 16 6
279 17.64 precipitation 0.1 43200 < th dose dependent rect. 16 6
297 17.65 temperature 25.0 43200 < th dose dependent rect. 10 1
350 17.69 radiation 20.0 270 < th dose independent sin 3 NA
363 17.69 radiation 40.0 270 < th dose dependent no NA NA
364 17.69 radiation 1.0 270 > th dose dependent rect. 5 11
402 17.70 wind 5.0 43200 > th dose independent rect. 20 14
410 17.71 temperature 20.0 43200 > th dose independent sin 14 NA
432 17.72 wind 3.0 14400 > th dose independent rect. 11 4
444 17.72 radiation 1.0 270 > th dose dependent no NA NA
519 17.73 wind 3.0 14400 < th dose independent rect. 13 1
522 17.73 humidity 90.0 43200 < th dose independent rect. 10 3
535 17.73 wind 5.0 43200 < th dose independent rect. 20 13
539 17.73 radiation 20.0 270 > th dose independent rect. 15 23
581 17.75 wind 3.0 14400 < th dose independent rect. 11 4
614 17.76 temperature 10.0 14400 > th dose dependent rect. 21 1
616 17.76 temperature 30.0 14400 < th dose dependent rect. 21 1
647 17.77 temperature 25.0 43200 < th dose dependent rect. 17 5
653 17.77 wind 5.0 43200 > th dose dependent rect. 20 13
703 17.78 temperature 25.0 43200 < th dose dependent rect. 9 13
729 17.79 temperature 25.0 43200 < th dose dependent rect. 17 1
752 17.80 temperature 20.0 43200 < th dose independent sin 14 NA
754 17.80 temperature 20.0 43200 < th dose independent rect. 24 1
778 17.80 wind 1.0 43200 < th dose dependent rect. 6 1
790 17.81 precipitation 0.1 43200 > th dose independent rect. 8 1
793 17.81 radiation 10.0 43200 > th dose independent rect. 8 2
820 17.81 precipitation 0.1 43200 > th dose dependent rect. 8 1
824 17.81 precipitation 0.1 43200 > th dose dependent rect. 18 4
865 17.82 precipitation 0.1 43200 > th dose dependent sin 18 NA
882 17.82 wind 7.0 43200 > th dose dependent rect. 20 10
985 17.85 precipitation 0.1 43200 < th dose independent rect. 16 1