BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0707300 Os01g0707300|AK104463
(221 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39510.1 | chr5:15822035-15823591 FORWARD LENGTH=222 296 4e-81
AT1G26670.1 | chr1:9216103-9217793 FORWARD LENGTH=223 285 1e-77
AT3G29100.1 | chr3:11075916-11076581 REVERSE LENGTH=196 226 6e-60
AT5G39630.1 | chr5:15868262-15869714 FORWARD LENGTH=208 159 1e-39
>AT5G39510.1 | chr5:15822035-15823591 FORWARD LENGTH=222
Length = 221
Score = 296 bits (759), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 141/220 (64%), Positives = 177/220 (80%)
Query: 1 MSEVFEGYERQYCEVSASLFRKCTTASALDGEKKKQKLSEIQSGVEEAESLIRKMDLEAR 60
MS+VF+GYERQYCE+SASL +KC++A +LDGE+KKQKLSEI+SG+E AE LIRKMDLEAR
Sbjct: 1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60
Query: 61 SLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLADTLAASTDQR 120
+L P++K+ LL KLRE+KSDLNN K+E+KRI++ A R+ELLE+G+ADT AS DQR
Sbjct: 61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
Query: 121 GRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNVG 180
RLMM+TERL ++ D++K+SRRT++ETEE+GVSILQDLH QRQSLL AH TLHGVDDN+G
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIG 180
Query: 181 KSKKILAAMSKRMDRNKWXXXXXXXXXXXXXXXXXYFKLA 220
KSKKIL M++RM++NKW YFKL
Sbjct: 181 KSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLT 220
>AT1G26670.1 | chr1:9216103-9217793 FORWARD LENGTH=223
Length = 222
Score = 285 bits (729), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/199 (68%), Positives = 170/199 (85%), Gaps = 1/199 (0%)
Query: 1 MSEVFEGYERQYCEVSASLFRKCTTASAL-DGEKKKQKLSEIQSGVEEAESLIRKMDLEA 59
MS+VFEGYERQYCE+S +L RKC +AS L +GE+KK K++EI+SG++EA+ LIRKMDLEA
Sbjct: 1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60
Query: 60 RSLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLADTLAASTDQ 119
RSLQPS KA L+KLREYKSDLN LK E KR+S+ +A+ ++REEL+ESG+AD A S DQ
Sbjct: 61 RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120
Query: 120 RGRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNV 179
RGRL M+ ERL+QS+D+I+ESRR +LETEE+G+SI+QDL QQRQ+LLHAH LHGVDD +
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAI 180
Query: 180 GKSKKILAAMSKRMDRNKW 198
KSKK+L AMS+RM RNKW
Sbjct: 181 DKSKKVLTAMSRRMTRNKW 199
>AT3G29100.1 | chr3:11075916-11076581 REVERSE LENGTH=196
Length = 195
Score = 226 bits (577), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 130/169 (76%)
Query: 52 IRKMDLEARSLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLAD 111
++KMDLEAR+L P+VK+ LL KLREYKSDLNN K+E+KRI++ N R+ELLE+G+AD
Sbjct: 26 VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 85
Query: 112 TLAASTDQRGRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTT 171
TL AS DQR RLMM+T+ L ++ D+IK+SRRTILETEELGVSILQDLH QRQSLL AH T
Sbjct: 86 TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 145
Query: 172 LHGVDDNVGKSKKILAAMSKRMDRNKWXXXXXXXXXXXXXXXXXYFKLA 220
LHGVDDNVGKSKKIL M++RM+RNKW YFKL
Sbjct: 146 LHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLT 194
>AT5G39630.1 | chr5:15868262-15869714 FORWARD LENGTH=208
Length = 207
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 132/189 (69%), Gaps = 4/189 (2%)
Query: 1 MSEVFEGYERQYCEVSASLFRKCTTASALDGEKKKQKLSEIQSGVEEAESLIRKMDLEAR 60
MS VF Y++QY E+S +L +KC+ A +L G +KK+KLSEI +E AE LI KMD A
Sbjct: 1 MSNVFHEYDQQYSELSINLSKKCSLAFSLKGGEKKEKLSEITYDLENAEKLISKMDHAAS 60
Query: 61 SLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLADTLAASTDQR 120
+L P++K+ LL KL+E KS L L++E+KR ++ N + TREE+LE+ AD DQR
Sbjct: 61 NLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKADL----ADQR 116
Query: 121 GRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNVG 180
RLM +TE L ++ + IK+S+R +LETE +G+SIL++L +Q++SL ++ LH +DD V
Sbjct: 117 SRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESLQNSQAMLHEIDDTVK 176
Query: 181 KSKKILAAM 189
+S+ I+ ++
Sbjct: 177 ESRSIVRSI 185
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.126 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,660,051
Number of extensions: 131323
Number of successful extensions: 597
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 4
Length of query: 221
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 126
Effective length of database: 8,502,049
Effective search space: 1071258174
Effective search space used: 1071258174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)