Os01g0560200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13).
FiT-DB / Search/ Help/ Sample detail
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Os01g0560200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.57 | 0.272 | 10.9 | -0.708 | 0.264 | 1.09 | -0.589 | -1.51 | -0.14 | 4.82 | 16.37 | 606 | -- | -- |
| 35.06 | 0.276 | 10.8 | -0.431 | 0.271 | 1.13 | -0.322 | -- | -0.0591 | 4.27 | 14.33 | 592 | -- | -- |
| 34.31 | 0.273 | 10.9 | -0.648 | 0.256 | 1.08 | -- | -1.23 | -0.118 | 4.23 | 16.08 | 605 | -- | -- |
| 35.39 | 0.277 | 10.8 | -0.422 | 0.272 | 1.13 | -- | -- | -0.0588 | 4.13 | 14.06 | 584 | -- | -- |
| 35.08 | 0.276 | 10.9 | -0.72 | -- | 1.04 | -- | -1.41 | -0.13 | -- | 13.22 | 975 | -- | -- |
| 50.59 | 0.333 | 10.8 | -0.155 | 0.233 | -- | -0.0278 | -- | 0.112 | 23.5 | -- | -- | -- | -- |
| 50.59 | 0.333 | 10.8 | -0.154 | 0.233 | -- | -- | -- | 0.112 | 23.4 | -- | -- | -- | -- |
| 36.68 | 0.282 | 10.8 | -0.434 | -- | 1.04 | -- | -- | -0.0519 | -- | 14.01 | 904 | -- | -- |
| 39.51 | 0.293 | 10.8 | -- | 0.276 | 0.953 | -- | -- | 0.0115 | 3.33 | 13.14 | 506 | -- | -- |
| 53.99 | 0.343 | 10.8 | -0.147 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 51.21 | 0.335 | 10.8 | -- | 0.231 | -- | -- | -- | 0.13 | 23.4 | -- | -- | -- | -- |
| 41.04 | 0.298 | 10.8 | -- | -- | 0.871 | -- | -- | 0.0199 | -- | 7.902 | 846 | -- | -- |
| 54.57 | 0.345 | 10.8 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 2 | 33.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 3 | 33.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 5 | 33.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 8 | 33.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 10 | 33.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 11 | 33.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 12 | 33.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 40 | 33.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 73 | 33.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 74 | 33.85 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 98 | 33.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 109 | 33.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 112 | 33.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 119 | 34.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 122 | 34.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 123 | 34.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 156 | 34.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 170 | 34.10 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 180 | 34.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 275 | 34.24 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 277 | 34.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 295 | 34.26 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 316 | 34.28 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 332 | 34.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 339 | 34.31 | temperature | 15 | 720 | > th | dose dependent | sin | 1 | NA |
| 340 | 34.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 392 | 34.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 393 | 34.36 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 434 | 34.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 483 | 34.44 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 500 | 34.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 577 | 34.52 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 607 | 34.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 693 | 34.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 723 | 34.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 785 | 34.66 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 841 | 34.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 869 | 34.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 872 | 34.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 896 | 34.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 20 |