BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0560200 Os01g0560200|AK102003
         (221 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0560200  Similar to Vesicle transport v-SNARE 13 (AtVTI...   410   e-115
Os01g0707300  Similar to Vesicle transport v-SNARE 13 (AtVTI...   294   3e-80
Os01g0560350  Similar to Vesicle transport v-SNARE 13 (AtVTI...   117   7e-27

>Os01g0560200 Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle
           transport v-SNARE protein VTI13) (Vesicle soluble NSF
           attachment protein receptor 13)
          Length = 221

 Score =  410 bits (1054), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/221 (92%), Positives = 204/221 (92%)

Query: 1   MADVFEGYERQYCEISASLARKCTAASALQGEKLKQKASEIKSGIDGAEALIKKMDLEAR 60
           MADVFEGYERQYCEISASLARKCTAASALQGEKLKQKASEIKSGIDGAEALIKKMDLEAR
Sbjct: 1   MADVFEGYERQYCEISASLARKCTAASALQGEKLKQKASEIKSGIDGAEALIKKMDLEAR 60

Query: 61  NQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAETLGVSADQK 120
           NQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAETLGVSADQK
Sbjct: 61  NQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAETLGVSADQK 120

Query: 121 SRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNIG 180
           SRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNIG
Sbjct: 121 SRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNIG 180

Query: 181 KSRRIMGAMVRRMDRNKWXXXXXXXXXXXXXXXXXYFKFVH 221
           KSRRIMGAMVRRMDRNKW                 YFKFVH
Sbjct: 181 KSRRIMGAMVRRMDRNKWIIGFIIALLVLVILVILYFKFVH 221



>Os01g0707300 Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle
           transport v-SNARE protein VTI13) (Vesicle soluble NSF
           attachment protein receptor 13)
          Length = 221

 Score =  294 bits (753), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 140/221 (63%), Positives = 175/221 (79%)

Query: 1   MADVFEGYERQYCEISASLARKCTAASALQGEKLKQKASEIKSGIDGAEALIKKMDLEAR 60
           M++VFEGYERQYCE+SASL RKCT ASAL GEK KQK SEI+SG++ AE+LI+KMDLEAR
Sbjct: 1   MSEVFEGYERQYCEVSASLFRKCTTASALDGEKKKQKLSEIQSGVEEAESLIRKMDLEAR 60

Query: 61  NQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAETLGVSADQK 120
           + QPSV+AGLLAKLREYKSDLNNLK  LKR++  NA+Q +REELLESG+A+TL  S DQ+
Sbjct: 61  SLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLADTLAASTDQR 120

Query: 121 SRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNIG 180
            RL+  TE+ N++ D+I++S RT+LETE+LGVS+LQDLHQQR+ L+HAH TL  VDDN+G
Sbjct: 121 GRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNVG 180

Query: 181 KSRRIMGAMVRRMDRNKWXXXXXXXXXXXXXXXXXYFKFVH 221
           KS++I+ AM +RMDRNKW                 YFK  +
Sbjct: 181 KSKKILAAMSKRMDRNKWIIGGIIAALVLAILLILYFKLAY 221



>Os01g0560350 Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle
           transport v-SNARE protein VTI13) (Vesicle soluble NSF
           attachment protein receptor 13)
          Length = 167

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/66 (84%), Positives = 58/66 (87%)

Query: 133 TTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNIGKSRRIMGAMVRR 192
           T D IRDS RTMLETED+GV LLQDLHQQR RLIHAH  L NVDDNIGKSRRI+GAMVRR
Sbjct: 6   TIDMIRDSKRTMLETEDIGVFLLQDLHQQRGRLIHAHDILHNVDDNIGKSRRIIGAMVRR 65

Query: 193 MDRNKW 198
           MDRNKW
Sbjct: 66  MDRNKW 71



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,665,459
Number of extensions: 203407
Number of successful extensions: 776
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 124
Effective length of database: 11,971,043
Effective search space: 1484409332
Effective search space used: 1484409332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)