BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0560200 Os01g0560200|AK102003
(221 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39510.1 | chr5:15822035-15823591 FORWARD LENGTH=222 261 2e-70
AT1G26670.1 | chr1:9216103-9217793 FORWARD LENGTH=223 245 2e-65
AT3G29100.1 | chr3:11075916-11076581 REVERSE LENGTH=196 199 1e-51
AT5G39630.1 | chr5:15868262-15869714 FORWARD LENGTH=208 148 3e-36
>AT5G39510.1 | chr5:15822035-15823591 FORWARD LENGTH=222
Length = 221
Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/220 (55%), Positives = 165/220 (75%)
Query: 1 MADVFEGYERQYCEISASLARKCTAASALQGEKLKQKASEIKSGIDGAEALIKKMDLEAR 60
M+DVF+GYERQYCE+SASL++KC++A +L GE+ KQK SEIKSG++ AE LI+KMDLEAR
Sbjct: 1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60
Query: 61 NQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAETLGVSADQK 120
P++++ LL KLRE+KSDLNN K +KR+T+G +R+ELLE+GMA+T SADQ+
Sbjct: 61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
Query: 121 SRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNIG 180
+RL+ TE+ +TTDR++DS RTM+ETE++GVS+LQDLH QR+ L+ AH TL VDDNIG
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIG 180
Query: 181 KSRRIMGAMVRRMDRNKWXXXXXXXXXXXXXXXXXYFKFV 220
KS++I+ M RRM++NKW YFK
Sbjct: 181 KSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLT 220
>AT1G26670.1 | chr1:9216103-9217793 FORWARD LENGTH=223
Length = 222
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/199 (60%), Positives = 156/199 (78%), Gaps = 1/199 (0%)
Query: 1 MADVFEGYERQYCEISASLARKCTAASAL-QGEKLKQKASEIKSGIDGAEALIKKMDLEA 59
M+DVFEGYERQYCE+S +L+RKC +AS L GE+ K K +EIKSGID A+ LI+KMDLEA
Sbjct: 1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60
Query: 60 RNQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAETLGVSADQ 119
R+ QPS +A L+KLREYKSDLN LK KRV++ +A+ SREEL+ESGMA+ VSADQ
Sbjct: 61 RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120
Query: 120 KSRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNI 179
+ RL E+ ++++DRIR+S R MLETE++G+S++QDL QQR+ L+HAH L VDD I
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAI 180
Query: 180 GKSRRIMGAMVRRMDRNKW 198
KS++++ AM RRM RNKW
Sbjct: 181 DKSKKVLTAMSRRMTRNKW 199
>AT3G29100.1 | chr3:11075916-11076581 REVERSE LENGTH=196
Length = 195
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/168 (57%), Positives = 122/168 (72%)
Query: 52 IKKMDLEARNQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAE 111
+KKMDLEARN P+V++ LL KLREYKSDLNN K +KR+T+GN +R+ELLE+GMA+
Sbjct: 26 VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 85
Query: 112 TLGVSADQKSRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGT 171
TL SADQ+SRL+ T+ +TTDRI+DS RT+LETE+LGVS+LQDLH QR+ L+ AH T
Sbjct: 86 TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 145
Query: 172 LDNVDDNIGKSRRIMGAMVRRMDRNKWXXXXXXXXXXXXXXXXXYFKF 219
L VDDN+GKS++I+ M RRM+RNKW YFK
Sbjct: 146 LHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKL 193
>AT5G39630.1 | chr5:15868262-15869714 FORWARD LENGTH=208
Length = 207
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 129/189 (68%), Gaps = 4/189 (2%)
Query: 1 MADVFEGYERQYCEISASLARKCTAASALQGEKLKQKASEIKSGIDGAEALIKKMDLEAR 60
M++VF Y++QY E+S +L++KC+ A +L+G + K+K SEI ++ AE LI KMD A
Sbjct: 1 MSNVFHEYDQQYSELSINLSKKCSLAFSLKGGEKKEKLSEITYDLENAEKLISKMDHAAS 60
Query: 61 NQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAETLGVSADQK 120
N P++++ LL KL+E KS L L+ +KR T+ N + +REE+LE+ A+ ADQ+
Sbjct: 61 NLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKADL----ADQR 116
Query: 121 SRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNIG 180
SRL++ TE +T + I+DS R +LETE++G+S+L++L +Q+E L ++ L +DD +
Sbjct: 117 SRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESLQNSQAMLHEIDDTVK 176
Query: 181 KSRRIMGAM 189
+SR I+ ++
Sbjct: 177 ESRSIVRSI 185
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,774,829
Number of extensions: 140481
Number of successful extensions: 647
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 4
Length of query: 221
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 126
Effective length of database: 8,502,049
Effective search space: 1071258174
Effective search space used: 1071258174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)