BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0705500 Os01g0705500|AK063120
         (53 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0705500  Conserved hypothetical protein                      107   2e-24
Os05g0542100  Conserved hypothetical protein                       85   1e-17

>Os01g0705500 Conserved hypothetical protein
          Length = 53

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MGAMGKLRVFVVQEPVVAASCLIAGFGLFLPAVVRPILDSFETAKQAPPTNSQ 53
          MGAMGKLRVFVVQEPVVAASCLIAGFGLFLPAVVRPILDSFETAKQAPPTNSQ
Sbjct: 1  MGAMGKLRVFVVQEPVVAASCLIAGFGLFLPAVVRPILDSFETAKQAPPTNSQ 53



>Os05g0542100 Conserved hypothetical protein
          Length = 65

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 44/49 (89%)

Query: 1  MGAMGKLRVFVVQEPVVAASCLIAGFGLFLPAVVRPILDSFETAKQAPP 49
          MG M KL++F V+EPVV ASCLIAGFGLFLPAVVRP+LDS+ETAKQ PP
Sbjct: 1  MGVMEKLKIFAVKEPVVTASCLIAGFGLFLPAVVRPMLDSWETAKQVPP 49



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,773,726
Number of extensions: 47215
Number of successful extensions: 102
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 53
Length of database: 17,035,801
Length adjustment: 26
Effective length of query: 27
Effective length of database: 15,678,237
Effective search space: 423312399
Effective search space used: 423312399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)