Os01g0705500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0705500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30 | 0.257 | 11.2 | -0.999 | 0.237 | 0.837 | -0.108 | -2.65 | -0.215 | 6.24 | 20.41 | 768 | -- | -- |
| 33.62 | 0.27 | 11.1 | -0.448 | 0.0637 | 0.826 | 0.273 | -- | -0.0726 | 5.38 | 14.01 | 1075 | -- | -- |
| 30.03 | 0.255 | 11.2 | -0.988 | 0.236 | 0.832 | -- | -2.61 | -0.212 | 6.14 | 20.47 | 768 | -- | -- |
| 33.72 | 0.27 | 11.1 | -0.443 | 0.0602 | 0.811 | -- | -- | -0.0603 | 3.16 | 14.17 | 1157 | -- | -- |
| 30.45 | 0.257 | 11.2 | -1.06 | -- | 0.737 | -- | -2.36 | -0.229 | -- | 20.61 | 1146 | -- | -- |
| 44.06 | 0.311 | 11.1 | -0.202 | 0.159 | -- | 0.078 | -- | 0.0813 | 1.78 | -- | -- | -- | -- |
| 44.09 | 0.311 | 11.1 | -0.204 | 0.159 | -- | -- | -- | 0.081 | 1.66 | -- | -- | -- | -- |
| 33.92 | 0.271 | 11.1 | -0.448 | -- | 0.834 | -- | -- | -0.0625 | -- | 13.98 | 1151 | -- | -- |
| 38.26 | 0.288 | 11.1 | -- | 0.0807 | 0.609 | -- | -- | 0.0108 | 2.09 | 13.61 | 1155 | -- | -- |
| 45.63 | 0.316 | 11.1 | -0.198 | -- | -- | -- | -- | 0.0845 | -- | -- | -- | -- | -- |
| 45.18 | 0.314 | 11.1 | -- | 0.155 | -- | -- | -- | 0.104 | 1.62 | -- | -- | -- | -- |
| 38.54 | 0.289 | 11.1 | -- | -- | 0.65 | -- | -- | 0.0141 | -- | 12.6 | 1117 | -- | -- |
| 46.65 | 0.319 | 11.1 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 28.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 28.82 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 15 | 28.84 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 19 | 28.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 56 | 28.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 57 | 28.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 62 | 28.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 70 | 29.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 71 | 29.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 79 | 29.02 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 112 | 29.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 12 |
| 117 | 29.07 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 9 |
| 123 | 29.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 126 | 29.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 129 | 29.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 176 | 29.16 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 186 | 29.17 | radiation | 30 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 196 | 29.18 | radiation | 30 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 299 | 29.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 316 | 29.44 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 349 | 29.49 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 413 | 29.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 429 | 29.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 463 | 29.59 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 470 | 29.62 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 486 | 29.64 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 505 | 29.67 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 508 | 29.68 | radiation | 10 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 521 | 29.69 | radiation | 10 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 533 | 29.70 | radiation | 10 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 534 | 29.70 | radiation | 10 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 545 | 29.71 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 553 | 29.72 | radiation | 10 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 560 | 29.73 | radiation | 1 | 4320 | > th | dose independent | sin | 15 | NA |
| 574 | 29.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 593 | 29.75 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 626 | 29.80 | radiation | 1 | 4320 | < th | dose independent | sin | 15 | NA |
| 632 | 29.81 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 640 | 29.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 691 | 29.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 21 |
| 692 | 29.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 22 |
| 745 | 29.90 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 759 | 29.91 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 785 | 29.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 808 | 29.95 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 844 | 29.98 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 849 | 29.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 904 | 29.99 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 908 | 29.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 936 | 30.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 939 | 30.01 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 942 | 30.01 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 968 | 30.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 991 | 30.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 21 |