Os05g0542100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0542100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.08 | 0.163 | 12.5 | -0.945 | 0.29 | 0.374 | 0.249 | -0.622 | -0.202 | 1.68 | 14.74 | 4621 | -- | -- |
| 12.44 | 0.164 | 12.5 | -0.798 | 0.283 | 0.411 | 0.247 | -- | -0.162 | 1.61 | 13.52 | 4439 | -- | -- |
| 12.33 | 0.164 | 12.5 | -0.956 | 0.289 | 0.378 | -- | -0.639 | -0.206 | 1.62 | 14.8 | 4626 | -- | -- |
| 12.69 | 0.166 | 12.5 | -0.805 | 0.283 | 0.413 | -- | -- | -0.163 | 1.55 | 13.49 | 4435 | -- | -- |
| 17.07 | 0.192 | 12.5 | -0.962 | -- | 0.414 | -- | -0.577 | -0.21 | -- | 15.12 | 5346 | -- | -- |
| 15.58 | 0.185 | 12.5 | -0.604 | 0.298 | -- | 0.259 | -- | -0.0803 | 1.65 | -- | -- | -- | -- |
| 15.84 | 0.186 | 12.5 | -0.613 | 0.297 | -- | -- | -- | -0.0817 | 1.59 | -- | -- | -- | -- |
| 17 | 0.192 | 12.5 | -0.816 | -- | 0.484 | -- | -- | -0.17 | -- | 13.84 | 3928 | -- | -- |
| 25.44 | 0.236 | 12.5 | -- | 0.332 | 0.166 | -- | -- | -0.0332 | 1.63 | 12.74 | 285 | -- | -- |
| 21.24 | 0.215 | 12.5 | -0.601 | -- | -- | -- | -- | -0.0751 | -- | -- | -- | -- | -- |
| 25.74 | 0.237 | 12.5 | -- | 0.286 | -- | -- | -- | -0.0134 | 1.52 | -- | -- | -- | -- |
| 27.11 | 0.243 | 12.5 | -- | -- | -0.296 | -- | -- | 0.0882 | -- | 15.5 | 47520 | -- | -- |
| 30.77 | 0.259 | 12.5 | -- | -- | -- | -- | -- | -0.00848 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.59 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 2 | 11.69 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 3 | 11.72 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 4 | 11.75 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 8 | 11.83 | radiation | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 11 | 11.86 | temperature | 10 | 90 | > th | dose dependent | sin | 10 | NA |
| 12 | 11.86 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 21 | 11.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 25 | 11.94 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 27 | 11.95 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 29 | 11.96 | radiation | 20 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 47 | 11.97 | wind | 9 | 14400 | > th | dose dependent | sin | 6 | NA |
| 51 | 11.98 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 56 | 11.99 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 58 | 11.99 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 64 | 11.99 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 66 | 11.99 | temperature | 15 | 4320 | > th | dose dependent | rect. | 11 | 9 |
| 68 | 12.00 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 73 | 12.00 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 94 | 12.01 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 126 | 12.02 | temperature | 15 | 4320 | > th | dose dependent | sin | 19 | NA |
| 204 | 12.04 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 207 | 12.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 210 | 12.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 292 | 12.05 | radiation | 1 | 14400 | < th | dose independent | sin | 8 | NA |
| 296 | 12.05 | radiation | 20 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 342 | 12.05 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 439 | 12.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 444 | 12.06 | temperature | 30 | 4320 | < th | dose dependent | sin | 18 | NA |
| 491 | 12.06 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 600 | 12.08 | wind | 9 | 14400 | > th | dose independent | sin | 7 | NA |
| 623 | 12.08 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 799 | 12.10 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 830 | 12.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 898 | 12.11 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 921 | 12.11 | radiation | 1 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 941 | 12.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 9 |