BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0704300 Os01g0704300|AK068954
         (216 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0704300  Conserved hypothetical protein                      379   e-105
Os09g0292900  Galactose oxidase, central domain containing p...   222   1e-58
Os02g0465600  Galactose oxidase, central domain containing p...    82   3e-16

>Os01g0704300 Conserved hypothetical protein
          Length = 216

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/216 (89%), Positives = 193/216 (89%)

Query: 1   MPAELRESAAATWLSVAATDQRVYLTDRSTGWASWFDPAKQQWGPTCRLRPDATVSTWGL 60
           MPAELRESAAATWLSVAATDQRVYLTDRSTGWASWFDPAKQQWGPTCRLRPDATVSTWGL
Sbjct: 1   MPAELRESAAATWLSVAATDQRVYLTDRSTGWASWFDPAKQQWGPTCRLRPDATVSTWGL 60

Query: 61  APGRGGAERLVLFGAKRCGRAEQAKSRVVIQAWEVDGDGLALSRGAAHDTMPGEMSERLF 120
           APGRGGAERLVLFGAKRCGRAEQAKSRVVIQAWEVDGDGLALSRGAAHDTMPGEMSERLF
Sbjct: 61  APGRGGAERLVLFGAKRCGRAEQAKSRVVIQAWEVDGDGLALSRGAAHDTMPGEMSERLF 120

Query: 121 PRXXXXXXXXXXXMSPSIGVCXXXXXXXXXXXXDPTIGAVLYELRDGVGSAVERWEWVPC 180
           PR           MSPSIGVC            DPTIGAVLYELRDGVGSAVERWEWVPC
Sbjct: 121 PRDEDGDEEDEEEMSPSIGVCGNAAGGYVYNAADPTIGAVLYELRDGVGSAVERWEWVPC 180

Query: 181 APSVEAEPLGRFILACSPVGLDELARGQPAACTTAQ 216
           APSVEAEPLGRFILACSPVGLDELARGQPAACTTAQ
Sbjct: 181 APSVEAEPLGRFILACSPVGLDELARGQPAACTTAQ 216



>Os09g0292900 Galactose oxidase, central domain containing protein
          Length = 394

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 145/212 (68%), Gaps = 16/212 (7%)

Query: 1   MPAELRESAAA--TWLSVAATDQRVYLTDRSTGWASWFDPAKQQWGPTCRLRPDATVSTW 58
           +P  LRESAAA  TWLS AATDQRVY+ DR+TG ASWFDPAKQQWGPT RLRPDATVSTW
Sbjct: 186 VPTALRESAAAAATWLSTAATDQRVYVADRATGTASWFDPAKQQWGPTSRLRPDATVSTW 245

Query: 59  GLAPGRGGAERLVLFGAKRCGRAEQAKSRVVIQAWEVDGDGLALSRG--AAHDTMPGEMS 116
           GLA GR GAE+++LFG K       A SRVVI++WEVDGD L+LS G  AAHDTMP EMS
Sbjct: 246 GLAAGRAGAEKIILFGVK------HADSRVVIRSWEVDGDSLSLSHGAAAAHDTMPSEMS 299

Query: 117 ERLFPRXXXXXXXXXXXMSPSIGVCXXXXXXXXXXXXDPTIGAVLYEL--RDGVGSAVER 174
           ERLFP             SPSIGVC             P  GAVLYEL      G  VER
Sbjct: 300 ERLFPHGDDGEEETS---SPSIGVCGNTAGGYVYNAAVPATGAVLYELRRGGVEGGGVER 356

Query: 175 WEWVPCAPSV-EAEPLGRFILACSPVGLDELA 205
           W WV CAP V EAE LGR ILACSPVGL ELA
Sbjct: 357 WAWVACAPVVAEAEALGRVILACSPVGLHELA 388



>Os02g0465600 Galactose oxidase, central domain containing protein
          Length = 401

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 94/219 (42%), Gaps = 62/219 (28%)

Query: 1   MPAELRESAAATWLSVAATDQRVYLTDRSTGWASWFDPAKQQWGPTCRLR-----PDATV 55
           MPA L    A+ W+S AA+++RVY+ +R TGWASWFDPA +QWGP  +L+       A+V
Sbjct: 181 MPAPL----ASRWVSSAASERRVYVVERRTGWASWFDPAARQWGPARQLQLPEGNNTASV 236

Query: 56  STWG-----LAPGRGGAERLVLFGAKRCGRAEQAKSRVVIQAWEVDGDGLALSRGAAHDT 110
            +W       + G G +ERL++      G+         +  W VDGD L L   A + +
Sbjct: 237 ESWAACGVTTSGGGGASERLLVLAGGGGGK---------VSLWGVDGDTLLLDAEANNTS 287

Query: 111 MPGEMSERLFPRXXXXXXXXXXXMSPSIGVCXXXXXXXXXXXXDPTIGAVLYELRD---- 166
           MP EMSERL                                  +P+ GAV YEL D    
Sbjct: 288 MPPEMSERLGGAGSIAAAAAGAASG------------YVYNASEPSKGAVRYELVDAEVG 335

Query: 167 -GVGSAVE----------------------RWEWVPCAP 182
            G GS  +                       WEW+PC P
Sbjct: 336 GGHGSYSDSDSKNGRHEKTWGKRSSGGSRWEWEWLPCPP 374



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,630,542
Number of extensions: 307821
Number of successful extensions: 631
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 3
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)