BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0704000 Os01g0704000|AK069992
         (203 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0704000  Pectinesterase inhibitor domain containing pro...   374   e-104
Os05g0543000  Plant invertase/pectin methylesterase inhibito...    85   4e-17

>Os01g0704000 Pectinesterase inhibitor domain containing protein
          Length = 203

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/203 (90%), Positives = 183/203 (90%)

Query: 1   MFRHXXXXXXXXXXXXXXXXXXXXDARPVHTGPYHVVIRTAAKPSRRLIGLGGNAAICQE 60
           MFRH                    DARPVHTGPYHVVIRTAAKPSRRLIGLGGNAAICQE
Sbjct: 1   MFRHLAALILSAVVLAASTSSGVVDARPVHTGPYHVVIRTAAKPSRRLIGLGGNAAICQE 60

Query: 61  VHYKALCGTLTTLPGVMTPQQLLDAALRVAESKAMMAEKRLADVMKSRAVKAEGTSMSST 120
           VHYKALCGTLTTLPGVMTPQQLLDAALRVAESKAMMAEKRLADVMKSRAVKAEGTSMSST
Sbjct: 61  VHYKALCGTLTTLPGVMTPQQLLDAALRVAESKAMMAEKRLADVMKSRAVKAEGTSMSST 120

Query: 121 LDTCKGAYSSLADALQKARDTIKSGGSHDDLMTELSSASTFSTDCGEAFDEFPDLTSPIP 180
           LDTCKGAYSSLADALQKARDTIKSGGSHDDLMTELSSASTFSTDCGEAFDEFPDLTSPIP
Sbjct: 121 LDTCKGAYSSLADALQKARDTIKSGGSHDDLMTELSSASTFSTDCGEAFDEFPDLTSPIP 180

Query: 181 GAQRHVNRLVSNCLDLAATIKEN 203
           GAQRHVNRLVSNCLDLAATIKEN
Sbjct: 181 GAQRHVNRLVSNCLDLAATIKEN 203



>Os05g0543000 Plant invertase/pectin methylesterase inhibitor domain containing
           protein
          Length = 206

 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 8/141 (5%)

Query: 64  KALCGTLTTLPGVMTPQQLLDAALRVAESKAMMAEKRLADVMKSRAVKAEGTSMSSTLDT 123
           K +C TL  LPGV +P++LL AA++++  KA  A  R      +     +GT M S LDT
Sbjct: 70  KKMCNTLRKLPGVSSPKELLTAAVKLSMRKAKAARAR---FEAAARAAEKGTPMESILDT 126

Query: 124 CKGAYSSLADALQKARDTIKSGGSHDDLMTELSSASTFSTDCGEAFDEF---PDLTSPIP 180
           CK  Y S   ALQ+ +  I +  S   L+T++S+A+TF+ DCG A++E    P L   + 
Sbjct: 127 CKEGYDSTVSALQEVQRCIDANDSKASLITKMSAATTFTGDCGNAYEERELEPSLA--LK 184

Query: 181 GAQRHVNRLVSNCLDLAATIK 201
             + +VNR+V+  L +AA +K
Sbjct: 185 ATKNNVNRVVTGALAIAAKLK 205



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,697,797
Number of extensions: 197924
Number of successful extensions: 686
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)