FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0704000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pectinesterase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0245) R2 : 0.000339
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0202 (0.0515) R2dN8 : 0.000437 R2N8 : 0.000339
σ : 0.461
deviance : 97.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.4 0.447 3.34 -0.014 0.129 -0.469 0.0836 1.53 -0.0262 9.21 1 16 -- --
92.41 0.448 3.32 0.0468 0.139 -0.359 0.123 -- -0.00915 9.12 1.05 16 -- --
90.42 0.443 3.34 -0.0112 0.13 -0.467 -- 1.54 -0.0262 9.12 1.01 16 -- --
92.45 0.448 3.32 0.0511 0.141 -0.35 -- -- -0.00955 8.71 1.057 16 -- --
91.38 0.445 3.34 -0.0159 -- -0.488 -- 1.59 -0.0261 -- 1.008 16 -- --
95.11 0.457 3.32 0.0938 0.201 -- -0.00832 -- -0.0131 6.98 -- -- -- --
95.11 0.457 3.32 0.0937 0.201 -- -- -- -0.0131 6.99 -- -- -- --
93.56 0.45 3.32 0.0479 -- -0.378 -- -- -0.00808 -- 1.032 16 -- --
92.52 0.448 3.32 -- 0.141 -0.358 -- -- -0.0148 8.73 1.051 16 -- --
97.23 0.461 3.33 0.0978 -- -- -- -- -0.0094 -- -- -- -- --
95.34 0.457 3.32 -- 0.202 -- -- -- -0.0235 6.96 -- -- -- --
93.62 0.451 3.33 -- -- -0.384 -- -- -0.0133 -- 1.035 16 -- --
97.48 0.461 3.33 -- -- -- -- -- -0.0202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.32 atmosphere 1010.0 30 < th dose dependent rect. 2 1
3 78.42 wind 1.0 30 < th dose independent rect. 2 1
4 78.42 temperature 15.0 30 > th dose independent rect. 3 23
5 78.45 wind 3.0 10 < th dose dependent rect. 2 1
15 78.52 temperature 25.0 30 < th dose independent rect. 2 1
16 78.52 temperature 30.0 30 < th dose dependent rect. 2 1
18 78.54 temperature 10.0 30 > th dose independent rect. 2 1
21 78.54 humidity 50.0 30 > th dose independent rect. 2 1
24 78.54 atmosphere 995.0 30 > th dose independent rect. 2 1
25 78.54 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 78.54 radiation 1.0 30 < th dose independent rect. 2 1
32 78.54 precipitation 0.1 30 < th dose independent rect. 2 1
35 78.54 radiation 1.0 30 < th dose dependent rect. 2 1
40 78.54 precipitation 0.1 30 < th dose dependent rect. 2 1
42 78.55 humidity 50.0 30 > th dose dependent rect. 2 1
43 78.55 atmosphere 1005.0 10 > th dose dependent rect. 2 1
44 78.56 temperature 10.0 30 > th dose dependent rect. 2 1
60 78.67 atmosphere 995.0 30 > th dose dependent rect. 2 1
90 78.76 atmosphere 1005.0 30 > th dose independent rect. 2 1
96 78.84 wind 1.0 30 > th dose independent rect. 2 1
101 78.94 wind 9.0 30 < th dose independent rect. 3 23
106 79.40 atmosphere 995.0 30 > th dose independent rect. 3 23
114 80.75 precipitation 0.1 30 < th dose independent rect. 3 23
115 80.75 precipitation 0.1 30 < th dose dependent rect. 3 23
123 81.57 radiation 1.0 43200 < th dose dependent rect. 3 1
130 82.11 humidity 50.0 30 > th dose independent rect. 3 23
142 82.50 wind 9.0 1440 < th dose independent rect. 3 1
143 82.50 temperature 10.0 1440 > th dose independent rect. 3 1
146 82.50 temperature 30.0 1440 < th dose independent rect. 3 1
150 82.50 humidity 50.0 1440 > th dose independent rect. 3 1
159 82.50 atmosphere 995.0 1440 > th dose independent rect. 3 1
160 82.50 radiation 1.0 1440 < th dose independent rect. 3 1
180 82.50 temperature 10.0 1440 > th dose independent rect. 4 23
215 84.73 wind 7.0 90 > th dose independent rect. 1 8
216 84.77 wind 7.0 90 > th dose dependent rect. 1 8
222 84.89 wind 7.0 90 > th dose independent rect. 8 1
223 84.89 wind 7.0 90 > th dose dependent rect. 8 1
275 85.42 humidity 90.0 90 < th dose independent rect. 2 1
296 86.40 atmosphere 1015.0 30 < th dose independent rect. 3 23
308 86.71 temperature 10.0 30 > th dose dependent rect. 3 23
312 86.80 wind 9.0 30 < th dose dependent rect. 3 23
381 87.80 precipitation 0.1 720 < th dose independent rect. 15 8
382 87.80 precipitation 0.1 720 < th dose dependent rect. 15 8
383 87.81 wind 1.0 10 < th dose independent rect. 14 13
385 87.83 temperature 10.0 720 > th dose independent rect. 15 8
388 87.83 temperature 10.0 720 > th dose independent rect. 23 16
391 87.86 wind 1.0 10 < th dose independent rect. 17 10
399 87.90 wind 1.0 10 < th dose independent rect. 21 6
404 87.93 humidity 90.0 10 > th dose independent rect. 24 3
412 87.97 atmosphere 995.0 720 > th dose independent rect. 23 16
413 87.97 radiation 20.0 270 > th dose dependent rect. 6 1
436 88.08 wind 9.0 720 < th dose independent rect. 3 8
438 88.09 temperature 10.0 720 > th dose independent rect. 3 8
439 88.09 atmosphere 995.0 720 > th dose independent rect. 3 8
440 88.09 temperature 10.0 720 > th dose independent rect. 11 16
442 88.11 wind 1.0 30 > th dose dependent rect. 2 1
448 88.21 radiation 20.0 270 > th dose independent rect. 6 1
472 88.38 radiation 40.0 90 > th dose dependent rect. 8 1
502 88.57 precipitation 0.1 720 < th dose independent rect. 11 16
503 88.57 precipitation 0.1 720 < th dose dependent rect. 11 16
507 88.59 radiation 20.0 30 < th dose dependent rect. 3 23
509 88.61 humidity 50.0 720 > th dose independent rect. 3 8
511 88.64 temperature 30.0 30 < th dose independent rect. 3 23
521 88.67 humidity 50.0 30 > th dose dependent rect. 3 23
525 88.72 wind 1.0 10 < th dose independent rect. 8 19
533 88.77 wind 1.0 10 < th dose independent rect. 6 21
541 88.84 radiation 40.0 720 < th dose independent rect. 15 8
548 88.88 atmosphere 1015.0 1440 < th dose independent rect. 3 1
551 88.88 radiation 10.0 30 < th dose independent rect. 3 23
560 88.94 temperature 25.0 10 < th dose dependent rect. 8 2
561 88.95 atmosphere 1015.0 720 < th dose independent rect. 3 8
565 88.96 wind 1.0 10 > th dose independent rect. 21 23
568 88.98 radiation 40.0 30 < th dose dependent rect. 3 23
580 89.05 temperature 20.0 720 > th dose dependent rect. 3 1
635 89.32 temperature 25.0 10 < th dose dependent rect. 10 1
677 89.49 wind 9.0 720 < th dose independent rect. 15 8
680 89.51 radiation 40.0 30 < th dose independent rect. 3 23
687 89.53 temperature 10.0 720 > th dose dependent rect. 3 1
701 89.57 temperature 25.0 10 < th dose independent rect. 2 12
704 89.58 temperature 25.0 10 < th dose independent rect. 2 14
718 89.64 humidity 90.0 720 > th dose independent rect. 3 1
743 89.72 wind 1.0 10 > th dose independent sin 15 NA
748 89.73 wind 1.0 30 > th dose independent rect. 3 23
750 89.73 humidity 80.0 14400 < th dose dependent rect. 7 2
753 89.74 humidity 80.0 14400 < th dose dependent rect. 5 4
769 89.79 humidity 90.0 720 < th dose independent rect. 1 3
781 89.82 humidity 80.0 4320 > th dose independent rect. 3 8
786 89.83 humidity 80.0 720 > th dose dependent rect. 3 1
805 89.89 humidity 80.0 4320 < th dose independent rect. 3 8
806 89.89 temperature 25.0 10 < th dose independent rect. 24 16
862 89.99 wind 1.0 14400 < th dose dependent rect. 6 1
895 90.02 atmosphere 995.0 720 > th dose independent rect. 15 8
896 90.02 atmosphere 995.0 720 > th dose independent rect. 11 16
970 90.05 humidity 70.0 4320 > th dose dependent rect. 3 7
972 90.06 temperature 25.0 10 > th dose independent rect. 23 21
985 90.11 humidity 70.0 14400 > th dose independent rect. 8 1