Os05g0543000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0543000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant invertase/pectin methylesterase inhibitor domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.91	(0.0695)	R²	:	0.435
β₁	:	1.52	(0.253)	R²_dD	:	0.048	R²_D	:	0.0205
β₂	:	1.09	(0.171)	R²_dC	:	0.0512	R²_C	:	0.0545
β₃	:	-3.49	(0.263)	R²_dE	:	0.264	R²_E	:	0.0362
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-15.7	(1.14)	R²_dD*E	:	0.272	R²_D*E	:	0.126
γ₁	:	0.257	(0.152)	R²_dN8	:	0.00517	R²_N8	:	-0.0127
σ	:	1.27
deviance	:	742.25
__

_____

C
peak time of C	:	15.4
E
wheather	:	wind
threshold	:	6.672
memory length	:	4320
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	18.3
open length of G	:	3.1

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
735.74	1.27	3.94	1.52	1.09	-3.55	1.97	-15.7	0.24	15.3	6.7	4321	18	3.07
932.25	1.42	3.94	1.35	0.905	-2.51	1.5	--	0.156	15.1	8.403	4318	18	3.07
742.25	1.27	3.91	1.52	1.09	-3.49	--	-15.7	0.257	15.4	6.672	4320	18.3	3.1
909.24	1.4	3.93	0.997	1.01	-3.39	--	--	0.257	15.5	8.411	4318	18.1	3
809.34	1.32	3.91	1.54	--	-3.46	--	-15.7	0.252	--	6.669	4317	18.4	3.05
1192.21	1.62	3.85	1.12	1.14	--	1.82	--	0.0325	14.9	--	--	--	--
1203.25	1.62	3.84	1.16	1.16	--	--	--	0.0438	15.1	--	--	--	--
967.85	1.45	3.93	1.03	--	-3.43	--	--	0.211	--	8.413	4317	18.2	2.89
931.3	1.42	3.93	--	1.09	-3.36	--	--	0.16	15	8.411	4318	18.1	2.95
1279.5	1.67	3.85	1.11	--	--	--	--	0.0136	--	--	--	--	--
1238.69	1.65	3.87	--	1.13	--	--	--	-0.0854	15.1	--	--	--	--
945.63	1.43	3.94	--	--	-3.79	--	--	0.068	--	8.8	4318	18.2	2.93
1312.02	1.69	3.87	--	--	--	--	--	-0.11	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	759.84	wind	7	4320	< th	dose independent	rect.	18	3
2	762.78	wind	7	4320	< th	dose independent	rect.	18	5
6	776.84	wind	7	4320	> th	dose independent	rect.	18	3
13	784.92	wind	5	4320	> th	dose dependent	rect.	18	4
92	799.45	humidity	80	1440	< th	dose independent	rect.	22	1
124	809.33	humidity	90	1440	< th	dose dependent	rect.	3	1
134	813.44	wind	5	1440	> th	dose independent	rect.	6	16
141	815.03	humidity	90	1440	< th	dose dependent	rect.	24	7
142	815.17	humidity	90	1440	< th	dose dependent	rect.	2	5
149	817.91	wind	5	1440	> th	dose independent	rect.	3	20
160	819.90	atmosphere	995	14400	> th	dose independent	rect.	15	6
162	820.07	wind	5	1440	< th	dose independent	rect.	7	15
168	820.34	atmosphere	995	14400	< th	dose independent	rect.	15	4
181	821.14	atmosphere	995	14400	> th	dose independent	rect.	11	10
229	822.34	atmosphere	995	14400	< th	dose independent	rect.	16	1
254	823.02	atmosphere	995	14400	< th	dose dependent	rect.	15	4
266	823.30	atmosphere	995	14400	< th	dose dependent	rect.	16	1
281	823.88	atmosphere	995	14400	< th	dose independent	rect.	18	1
284	823.88	atmosphere	995	14400	< th	dose dependent	rect.	18	1
346	825.29	wind	5	1440	< th	dose independent	rect.	3	20
377	827.00	wind	5	1440	> th	dose independent	sin	23	NA
452	832.30	wind	5	1440	< th	dose independent	sin	23	NA
491	836.00	radiation	1	14400	< th	dose dependent	rect.	22	4
506	836.35	atmosphere	995	14400	< th	dose dependent	rect.	4	12
507	836.41	atmosphere	995	14400	< th	dose independent	rect.	4	11
527	838.61	humidity	90	1440	< th	dose dependent	rect.	24	4
529	838.63	atmosphere	995	14400	< th	dose independent	rect.	24	16
536	838.97	atmosphere	995	14400	> th	dose independent	rect.	3	12
561	839.92	atmosphere	995	14400	> th	dose independent	rect.	20	20
562	839.98	atmosphere	995	14400	> th	dose independent	rect.	22	18
564	840.09	atmosphere	995	14400	> th	dose independent	rect.	24	16
573	840.26	radiation	1	14400	< th	dose dependent	rect.	20	6
654	845.96	atmosphere	995	14400	> th	dose independent	sin	4	NA
674	847.53	wind	7	4320	< th	dose independent	rect.	8	1
681	847.82	atmosphere	995	14400	< th	dose dependent	sin	1	NA
695	848.12	humidity	90	1440	< th	dose dependent	rect.	5	2
697	848.21	atmosphere	995	14400	< th	dose independent	sin	4	NA
713	848.64	atmosphere	995	14400	> th	dose independent	sin	22	NA
739	849.51	atmosphere	995	14400	< th	dose independent	sin	22	NA
772	851.00	humidity	80	1440	< th	dose dependent	rect.	22	1
788	852.16	humidity	80	1440	> th	dose independent	rect.	6	1
793	852.36	humidity	70	1440	> th	dose dependent	rect.	24	7
807	852.72	atmosphere	995	14400	< th	dose dependent	rect.	5	19
859	853.27	humidity	80	1440	< th	dose dependent	rect.	21	3
865	853.40	humidity	80	1440	> th	dose independent	rect.	22	1
914	855.39	wind	5	1440	> th	dose independent	rect.	11	23
936	856.62	wind	5	1440	> th	dose independent	rect.	21	23