BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0694300 Os01g0694300|AK063899
         (141 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0694300  Conserved hypothetical protein                      284   1e-77
Os07g0693900  Armadillo-like helical domain containing protein    154   3e-38

>Os01g0694300 Conserved hypothetical protein
          Length = 141

 Score =  284 bits (727), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   VDNVPIPLLFMRTVIQALDAFPALVDFVMEILSRLVNKQIWKMPKLWVGFLKLAYQTQPR 60
           VDNVPIPLLFMRTVIQALDAFPALVDFVMEILSRLVNKQIWKMPKLWVGFLKLAYQTQPR
Sbjct: 1   VDNVPIPLLFMRTVIQALDAFPALVDFVMEILSRLVNKQIWKMPKLWVGFLKLAYQTQPR 60

Query: 61  SFDVILQLPPPQLEIALNKYPNLRTPLCSFVNQRNMHSILPRQILKVLGFINEPHQAPIP 120
           SFDVILQLPPPQLEIALNKYPNLRTPLCSFVNQRNMHSILPRQILKVLGFINEPHQAPIP
Sbjct: 61  SFDVILQLPPPQLEIALNKYPNLRTPLCSFVNQRNMHSILPRQILKVLGFINEPHQAPIP 120

Query: 121 FVPAAMQTADATSSLPGATLM 141
           FVPAAMQTADATSSLPGATLM
Sbjct: 121 FVPAAMQTADATSSLPGATLM 141



>Os07g0693900 Armadillo-like helical domain containing protein
          Length = 1245

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 97/139 (69%)

Query: 1    VDNVPIPLLFMRTVIQALDAFPALVDFVMEILSRLVNKQIWKMPKLWVGFLKLAYQTQPR 60
            V+ +P+PLLFMRTV+QA+ AFPALVDFVM+I+SRLV+KQIWK PKLWVGFLK A  T+P+
Sbjct: 1096 VEQIPLPLLFMRTVMQAIGAFPALVDFVMDIMSRLVSKQIWKYPKLWVGFLKCAILTKPQ 1155

Query: 61   SFDVILQLPPPQLEIALNKYPNLRTPLCSFVNQRNMHSILPRQILKVLGFINEPHQAPIP 120
            S+ V+LQLP PQLE ALNK P L+ PL    NQ N+ S LPR  L VLG   +  Q    
Sbjct: 1156 SYGVLLQLPAPQLENALNKNPVLKAPLVEHANQPNVRSTLPRSTLVVLGLAEDQQQPAPQ 1215

Query: 121  FVPAAMQTADATSSLPGAT 139
               +  Q A+ +SS    T
Sbjct: 1216 AQSSQNQAAETSSSAADTT 1234



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,926,487
Number of extensions: 187626
Number of successful extensions: 507
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)