BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0693800 Os01g0693800|AK073138
(525 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0693800 Similar to Threonine synthase, chloroplast pre... 971 0.0
Os05g0549700 Similar to Threonine synthase, chloroplast pre... 847 0.0
>Os01g0693800 Similar to Threonine synthase, chloroplast precursor (EC 4.2.3.1)
(TS)
Length = 525
Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/525 (91%), Positives = 478/525 (91%)
Query: 1 MATATASSLSLLFAHPHSSNPRPFAGGXXXXXXXXXXXXXXXCASDXXXXXXXXXXPAEE 60
MATATASSLSLLFAHPHSSNPRPFAGG CASD PAEE
Sbjct: 1 MATATASSLSLLFAHPHSSNPRPFAGGPHLRRPLRAAPHRARCASDAATTATRHRRPAEE 60
Query: 61 NIREEAARLRGPGNDFSAWYVXXXXXXXXXXXXRYSLDEVVYRSSSGGLLDVCHDMEALA 120
NIREEAARLRGPGNDFSAWYV RYSLDEVVYRSSSGGLLDVCHDMEALA
Sbjct: 61 NIREEAARLRGPGNDFSAWYVPFPPTPEDDPDERYSLDEVVYRSSSGGLLDVCHDMEALA 120
Query: 121 RFPGSYWRDLFDSRVGRTAWPYGSGVWSKKEFVLPEIDSDHIVSLFEGNSNLFWAERLGR 180
RFPGSYWRDLFDSRVGRTAWPYGSGVWSKKEFVLPEIDSDHIVSLFEGNSNLFWAERLGR
Sbjct: 121 RFPGSYWRDLFDSRVGRTAWPYGSGVWSKKEFVLPEIDSDHIVSLFEGNSNLFWAERLGR 180
Query: 181 EHLGGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPINGVGCASTGDTSXX 240
EHLGGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPINGVGCASTGDTS
Sbjct: 181 EHLGGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPINGVGCASTGDTSAA 240
Query: 241 XXXXXXXXGIPAIVFLPADRISLQQLIQPIANGATVLSLDTDFDGCMRLIREVTAELPIY 300
GIPAIVFLPADRISLQQLIQPIANGATVLSLDTDFDGCMRLIREVTAELPIY
Sbjct: 241 LSAYCAAAGIPAIVFLPADRISLQQLIQPIANGATVLSLDTDFDGCMRLIREVTAELPIY 300
Query: 301 LANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFEMCRVLGLVDR 360
LANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFEMCRVLGLVDR
Sbjct: 301 LANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFEMCRVLGLVDR 360
Query: 361 VPRLVCAQAANANPLYRFYKSGWTDFQPRVAETTFASAIQIGDPVSVDRAVVALKATDGI 420
VPRLVCAQAANANPLYRFYKSGWTDFQPRVAETTFASAIQIGDPVSVDRAVVALKATDGI
Sbjct: 361 VPRLVCAQAANANPLYRFYKSGWTDFQPRVAETTFASAIQIGDPVSVDRAVVALKATDGI 420
Query: 421 VEEATEEELMDAMSLADRTGMFACPHTGVALAALFKLRDQRIIGPNDRTVVVSTAHGLKF 480
VEEATEEELMDAMSLADRTGMFACPHTGVALAALFKLRDQRIIGPNDRTVVVSTAHGLKF
Sbjct: 421 VEEATEEELMDAMSLADRTGMFACPHTGVALAALFKLRDQRIIGPNDRTVVVSTAHGLKF 480
Query: 481 TQSKIDYHDRNIKDMLCQYANPPINVKADFASVMDVLQNKLNGKI 525
TQSKIDYHDRNIKDMLCQYANPPINVKADFASVMDVLQNKLNGKI
Sbjct: 481 TQSKIDYHDRNIKDMLCQYANPPINVKADFASVMDVLQNKLNGKI 525
>Os05g0549700 Similar to Threonine synthase, chloroplast precursor (EC 4.2.3.1)
(TS)
Length = 521
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/524 (79%), Positives = 445/524 (84%), Gaps = 5/524 (0%)
Query: 2 ATATASSLSLLFAHPHSSNPRPFAGGXXXXXXXXXXXXXXXCASDXXXXXXXXXXPAEEN 61
AT A+SLS L +HPH P CA+D A+EN
Sbjct: 3 ATTHAASLSFLLSHPH---PTSPNPNPNPNLPLRRAPHRVRCATDAAATRHRRA--ADEN 57
Query: 62 IREEAARLRGPGNDFSAWYVXXXXXXXXXXXXRYSLDEVVYRSSSGGLLDVCHDMEALAR 121
IREEAAR R P ++FSAWY RYSLDE+VYRSSSGGLLDV HDM+ALAR
Sbjct: 58 IREEAARHRAPNHNFSAWYAPFPPAPNGDPDERYSLDEIVYRSSSGGLLDVRHDMDALAR 117
Query: 122 FPGSYWRDLFDSRVGRTAWPYGSGVWSKKEFVLPEIDSDHIVSLFEGNSNLFWAERLGRE 181
FPGSYWRDLFDSRVGRT WP+GSGVWSKKEFVLPEID DHIVSLFEGNSNLFWAERLGR+
Sbjct: 118 FPGSYWRDLFDSRVGRTTWPFGSGVWSKKEFVLPEIDPDHIVSLFEGNSNLFWAERLGRD 177
Query: 182 HLGGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPINGVGCASTGDTSXXX 241
HL GM DLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPI GVGCASTGDTS
Sbjct: 178 HLAGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPIAGVGCASTGDTSAAL 237
Query: 242 XXXXXXXGIPAIVFLPADRISLQQLIQPIANGATVLSLDTDFDGCMRLIREVTAELPIYL 301
GIPAIVFLPA+RISL+QLIQPIANGATVLSLDTDFDGCMRLIREVTAELPIYL
Sbjct: 238 SAYCAAAGIPAIVFLPANRISLEQLIQPIANGATVLSLDTDFDGCMRLIREVTAELPIYL 297
Query: 302 ANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFEMCRVLGLVDRV 361
ANSLNSLRLEGQKTAAIEILQQFDW+VPDWVIVPGGNLGNIYAFYKGFEMCRVLGLVDRV
Sbjct: 298 ANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFEMCRVLGLVDRV 357
Query: 362 PRLVCAQAANANPLYRFYKSGWTDFQPRVAETTFASAIQIGDPVSVDRAVVALKATDGIV 421
PRLVCAQAANANPLYR+YKSGWT+F P+VAE TFASAIQIGDPVSVDRAVVALKATDGIV
Sbjct: 358 PRLVCAQAANANPLYRYYKSGWTEFTPQVAEPTFASAIQIGDPVSVDRAVVALKATDGIV 417
Query: 422 EEATEEELMDAMSLADRTGMFACPHTGVALAALFKLRDQRIIGPNDRTVVVSTAHGLKFT 481
EEATEEELM+AMSLADRTGMFACPHTGVALAALFKLRDQRIIGPNDRTVVVSTAHGLKF+
Sbjct: 418 EEATEEELMNAMSLADRTGMFACPHTGVALAALFKLRDQRIIGPNDRTVVVSTAHGLKFS 477
Query: 482 QSKIDYHDRNIKDMLCQYANPPINVKADFASVMDVLQNKLNGKI 525
QSKIDYHD I+DM C+YANPP++VKADF +VMDVL+ +L GK+
Sbjct: 478 QSKIDYHDSKIEDMACKYANPPVSVKADFGAVMDVLKKRLKGKL 521
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,503,814
Number of extensions: 661136
Number of successful extensions: 1184
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 2
Length of query: 525
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 420
Effective length of database: 11,553,331
Effective search space: 4852399020
Effective search space used: 4852399020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)