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Os05g0549700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.02) R2 : 0.695
β1 : 1.17 (0.0752) R2dD : 0.182 R2D : 0.221
β2 : 0.806 (0.0525) R2dC : 0.169 R2C : 0.228
β3 : -1.32 (0.0903) R2dE : 0.177 R2E : 0.35
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.24 (0.0448) R2dN8 : 0.0291 R2N8 : 0.0294
σ : 0.37
deviance : 63.11
__
_____
C
peak time of C : 19.4
E
wheather : temperature
threshold : 31.36
memory length : 122
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.36 0.371 12.5 1.19 0.816 -1.29 0.533 -0.0157 0.243 19.3 31.15 119 -- --
62.36 0.368 12.5 1.19 0.815 -1.29 0.535 -- 0.243 19.3 31.16 118 -- --
63.11 0.37 12.5 1.19 0.813 -1.3 -- -0.0539 0.249 19.3 31.36 118 -- --
63.11 0.37 12.5 1.17 0.806 -1.32 -- -- 0.24 19.4 31.36 122 -- --
87.25 0.435 12.5 1.07 -- -1.96 -- -0.121 0.176 -- 48.7 325 -- --
82.88 0.427 12.4 1.49 1.07 -- 0.84 -- 0.466 18 -- -- -- --
84.61 0.431 12.4 1.48 1.08 -- -- -- 0.469 18 -- -- -- --
87.25 0.435 12.5 1.05 -- -1.96 -- -- 0.176 -- 64.21 327 -- --
95.85 0.456 12.5 -- 0.659 -1.8 -- -- 0.0455 20 31.08 131 -- --
144.72 0.562 12.4 1.45 -- -- -- -- 0.444 -- -- -- -- --
142.61 0.559 12.5 -- 1.06 -- -- -- 0.304 18.1 -- -- -- --
114.17 0.498 12.5 -- -- -2.31 -- -- 0.0186 -- 58.82 335 -- --
200.36 0.661 12.4 -- -- -- -- -- 0.283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.73 temperature 15.0 90 > th dose dependent rect. 8 21
19 59.50 temperature 30.0 90 < th dose dependent rect. 5 16
22 59.64 temperature 15.0 270 > th dose dependent rect. 17 22
39 60.32 temperature 30.0 270 < th dose dependent rect. 1 21
45 60.40 temperature 30.0 90 < th dose dependent rect. 5 18
47 60.51 precipitation 0.1 43200 > th dose independent rect. 17 1
50 60.60 precipitation 0.1 43200 < th dose independent rect. 17 1
51 60.60 precipitation 0.1 43200 > th dose dependent rect. 17 1
52 60.60 precipitation 0.1 43200 < th dose dependent rect. 17 1
60 60.85 temperature 25.0 1440 > th dose independent rect. 7 2
61 60.85 temperature 25.0 1440 < th dose independent rect. 7 2
63 60.88 wind 9.0 43200 > th dose dependent rect. 20 1
80 61.19 atmosphere 1000.0 43200 < th dose independent rect. 14 1
81 61.20 temperature 20.0 14400 < th dose independent rect. 21 1
84 61.23 atmosphere 1000.0 43200 < th dose dependent rect. 15 1
92 61.41 atmosphere 1000.0 43200 > th dose independent rect. 14 1
94 61.44 wind 9.0 14400 > th dose dependent rect. 19 16
96 61.45 temperature 20.0 14400 > th dose independent rect. 20 2
105 61.53 atmosphere 1000.0 43200 > th dose independent rect. 11 1
108 61.55 atmosphere 1000.0 43200 < th dose independent rect. 11 1
120 61.68 radiation 10.0 43200 < th dose dependent rect. 9 1
129 61.81 wind 1.0 43200 > th dose independent rect. 8 1
141 61.86 radiation 1.0 43200 < th dose dependent rect. 21 7
147 61.92 wind 9.0 14400 > th dose independent rect. 19 16
155 62.02 atmosphere 1000.0 43200 < th dose independent rect. 10 5
158 62.03 atmosphere 1000.0 43200 > th dose independent rect. 10 5
160 62.04 precipitation 0.1 4320 < th dose independent rect. 13 5
161 62.04 precipitation 0.1 4320 < th dose dependent rect. 13 5
167 62.08 humidity 80.0 43200 > th dose independent rect. 21 3
176 62.11 precipitation 0.1 4320 > th dose independent rect. 13 5
189 62.19 precipitation 0.1 4320 < th dose independent rect. 10 8
191 62.19 precipitation 0.1 4320 < th dose dependent rect. 10 8
196 62.22 humidity 80.0 43200 < th dose independent rect. 21 2
197 62.22 wind 5.0 43200 < th dose independent rect. 18 4
199 62.22 atmosphere 1000.0 43200 < th dose independent rect. 4 11
209 62.26 temperature 30.0 1440 < th dose dependent rect. 8 1
214 62.28 atmosphere 995.0 43200 < th dose dependent rect. 15 7
217 62.30 atmosphere 1000.0 43200 > th dose independent rect. 4 11
219 62.31 atmosphere 1000.0 43200 < th dose independent rect. 4 9
221 62.32 wind 9.0 14400 < th dose independent rect. 19 16
226 62.34 wind 5.0 43200 < th dose independent rect. 19 2
237 62.37 temperature 10.0 90 > th dose dependent sin 4 NA
241 62.39 wind 9.0 43200 > th dose independent rect. 20 1
246 62.40 wind 3.0 43200 > th dose dependent rect. 18 4
248 62.40 temperature 30.0 90 < th dose dependent rect. 11 23
257 62.44 atmosphere 1000.0 43200 < th dose independent rect. 4 3
258 62.44 atmosphere 995.0 43200 > th dose independent rect. 14 8
266 62.46 atmosphere 1000.0 43200 > th dose independent rect. 4 8
276 62.48 temperature 15.0 1440 > th dose dependent rect. 8 1
286 62.51 temperature 30.0 90 < th dose dependent rect. 13 23
289 62.52 wind 3.0 43200 > th dose dependent rect. 20 1
300 62.54 wind 5.0 43200 > th dose independent rect. 17 5
304 62.54 wind 1.0 43200 < th dose dependent rect. 1 1
309 62.56 atmosphere 995.0 43200 < th dose independent rect. 14 8
310 62.57 radiation 10.0 43200 > th dose independent rect. 9 1
340 62.64 temperature 30.0 270 < th dose dependent rect. 9 23
349 62.68 humidity 80.0 43200 > th dose independent rect. 21 6
356 62.71 wind 5.0 43200 > th dose independent rect. 19 2
357 62.71 atmosphere 1000.0 43200 > th dose independent rect. 4 4
366 62.75 temperature 30.0 90 < th dose dependent no NA NA
387 62.79 atmosphere 1000.0 43200 < th dose independent rect. 6 1
395 62.82 atmosphere 1000.0 43200 > th dose independent rect. 6 1
397 62.82 temperature 10.0 90 > th dose dependent no NA NA
408 62.84 temperature 30.0 90 < th dose dependent rect. 15 23
410 62.85 humidity 60.0 14400 < th dose independent rect. 17 16
447 62.98 wind 5.0 43200 < th dose independent rect. 15 16
450 62.98 temperature 15.0 270 > th dose dependent rect. 22 14
451 62.99 atmosphere 995.0 43200 > th dose independent rect. 15 3
468 63.03 wind 9.0 43200 < th dose independent rect. 20 1
485 63.08 humidity 80.0 43200 > th dose independent rect. 21 10
496 63.09 temperature 30.0 30 < th dose dependent rect. 5 23
512 63.12 humidity 80.0 43200 < th dose dependent rect. 21 11
515 63.13 wind 5.0 43200 > th dose independent rect. 15 16
516 63.13 temperature 10.0 270 > th dose dependent sin 7 NA
522 63.15 atmosphere 1000.0 43200 > th dose independent rect. 23 1
527 63.16 atmosphere 1000.0 43200 < th dose independent rect. 23 1
546 63.21 humidity 90.0 14400 < th dose independent rect. 18 1
563 63.24 wind 9.0 43200 > th dose dependent rect. 13 18
585 63.28 temperature 30.0 90 < th dose dependent rect. 3 23
588 63.29 wind 9.0 14400 < th dose independent rect. 19 11
629 63.35 precipitation 0.1 4320 > th dose dependent rect. 5 13
631 63.36 humidity 80.0 43200 < th dose independent rect. 21 11
637 63.37 atmosphere 1000.0 43200 < th dose dependent sin 21 NA
645 63.39 wind 5.0 43200 < th dose independent sin 14 NA
678 63.44 wind 3.0 43200 > th dose dependent rect. 14 20
692 63.46 humidity 80.0 43200 < th dose dependent rect. 1 7
704 63.48 wind 1.0 43200 < th dose dependent rect. 8 23
710 63.50 humidity 90.0 14400 > th dose dependent rect. 21 1
713 63.50 wind 3.0 43200 > th dose dependent rect. 16 15
735 63.54 wind 5.0 43200 > th dose independent sin 14 NA
745 63.55 wind 7.0 43200 > th dose dependent rect. 13 20
753 63.57 humidity 60.0 14400 < th dose independent rect. 17 3
776 63.59 temperature 30.0 10 < th dose dependent rect. 1 23
798 63.63 wind 3.0 43200 > th dose dependent rect. 3 20
804 63.64 wind 9.0 14400 > th dose dependent rect. 19 11
833 63.68 wind 9.0 43200 < th dose dependent rect. 20 1
845 63.69 temperature 25.0 14400 < th dose dependent rect. 17 1
870 63.72 wind 9.0 14400 > th dose independent rect. 19 11
885 63.73 wind 1.0 43200 < th dose dependent rect. 5 23
892 63.74 wind 9.0 43200 > th dose dependent sin 15 NA
893 63.74 temperature 30.0 90 < th dose dependent sin 3 NA
910 63.76 wind 3.0 43200 > th dose dependent sin 13 NA
935 63.79 wind 7.0 43200 > th dose dependent rect. 3 18
939 63.79 wind 3.0 43200 > th dose dependent rect. 9 23
953 63.82 atmosphere 1000.0 43200 < th dose independent rect. 21 18
957 63.82 wind 1.0 43200 < th dose dependent rect. 8 1
959 63.82 wind 7.0 43200 > th dose dependent rect. 8 13
970 63.83 wind 5.0 43200 > th dose independent rect. 16 12
981 63.84 humidity 80.0 43200 < th dose dependent rect. 21 2
986 63.85 humidity 60.0 14400 > th dose independent rect. 17 4
992 63.85 wind 9.0 43200 > th dose independent rect. 13 20
996 63.85 wind 1.0 43200 < th dose dependent rect. 3 23