BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0549700 Os05g0549700|AK101669
         (521 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29840.1  | chr4:14599434-14601014 REVERSE LENGTH=527          741   0.0  
AT1G72810.1  | chr1:27398760-27400393 REVERSE LENGTH=517          709   0.0  

>AT4G29840.1 | chr4:14599434-14601014 REVERSE LENGTH=527
          Length = 526

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/463 (77%), Positives = 397/463 (85%), Gaps = 6/463 (1%)

Query: 56  ENIREEAARHRAPNHN-FSAWYAPFPPAPNGDPDERYSLDEIVYRSSSGGLLDVRHDMDA 114
           +NIR+EA R+R+   N FSA Y PF  AP     E YSLDEIVYRS SGGLLDV HDM+A
Sbjct: 62  DNIRDEARRNRSNAVNPFSAKYVPFNAAPGST--ESYSLDEIVYRSRSGGLLDVEHDMEA 119

Query: 115 LARFPGSYWRDLFDSRVGRTTWPFGSGVWSKKEFVLPEIDPDHIVSLFEGNSNLFWAERL 174
           L RF G+YWRDLFDSRVG++TWP+GSGVWSKKE+VLPEID D IVS FEGNSNLFWAER 
Sbjct: 120 LKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERF 179

Query: 175 GRDHLAGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPIAGVGCASTGDTS 234
           G+  L GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLR+  + RP+ GVGCASTGDTS
Sbjct: 180 GKQFL-GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRK--MKRPVVGVGCASTGDTS 236

Query: 235 XXXXXXXXXXGIPAIVFLPANRISLEQLIQPIANGATVLSLDTDFDGCMRLIREVTAELP 294
                     GIP+IVFLPAN+IS+ QL+QPIANGA VLS+DTDFDGCM+LIRE+TAELP
Sbjct: 237 AALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELP 296

Query: 295 IYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFEMCRVLGLV 354
           IYLANSLNSLRLEGQKTAAIEILQQFDW+VPDWVIVPGGNLGNIYAFYKGF+MC+ LGLV
Sbjct: 297 IYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLV 356

Query: 355 DRVPRLVCAQAANANPLYRYYKSGWTEFTPQVAEPTFASAIQIGDPVSVDRAVVALKATD 414
           DR+PR+VCAQAANANPLY +YKSGW +F P  A  TFASAIQIGDPVS+DRAV ALK  +
Sbjct: 357 DRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCN 416

Query: 415 GIVEEATEEELMNAMSLADRTGMFACPHTGVALAALFKLRDQRIIGPNDRTVVVSTAHGL 474
           GIVEEATEEELM+AM+ AD TGMF CPHTGVAL ALFKLR+Q +I P DRTVVVSTAHGL
Sbjct: 417 GIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGL 476

Query: 475 KFSQSKIDYHDSKIEDMACKYANPPVSVKADFGAVMDVLKKRL 517
           KF+QSKIDYH + I DMAC+++NPPV VKADFGAVMDVLK  L
Sbjct: 477 KFTQSKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYL 519



>AT1G72810.1 | chr1:27398760-27400393 REVERSE LENGTH=517
          Length = 516

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/464 (74%), Positives = 387/464 (83%), Gaps = 6/464 (1%)

Query: 56  ENIREEAARHRAPNHNFSAWYAPFPPAPNGDPDERYSLDEIVYRSSSGGLLDVRHDMDAL 115
           ENIR+EA R      N SA Y PF   P+    E YSLDEIVYRS SG LLDV+HD  AL
Sbjct: 54  ENIRDEARRRPHQLQNLSARYVPFNAPPSST--ESYSLDEIVYRSQSGALLDVQHDFAAL 111

Query: 116 ARFPGSYWRDLFDSRVGRTTWPFGSGVWSKKEFVLPEIDPDHIVSLFEGNSNLFWAERLG 175
            R+ G +WR+LFDSRVG+T WP+GSGVWSKKE+VLPEID D IVS FEGNSNLFWAER G
Sbjct: 112 KRYDGEFWRNLFDSRVGKTNWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFG 171

Query: 176 RDHLAGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPIAGVGCASTGDTSX 235
           + +L  MNDLWVKHCGISHTGSFKDLGM+VLVSQVNRLR+  +++P+ GVGCASTGDTS 
Sbjct: 172 KQYLQ-MNDLWVKHCGISHTGSFKDLGMSVLVSQVNRLRK--MNKPVIGVGCASTGDTSA 228

Query: 236 XXXXXXXXXGIPAIVFLPANRISLEQLIQPIANGATVLSLDTDFDGCMRLIREVTAELPI 295
                    GIP+IVFLPA++IS+ QL+QPIANGA VLS+DTDFDGCM LIREVTAELPI
Sbjct: 229 ALSAYCASAGIPSIVFLPADKISMAQLVQPIANGAFVLSIDTDFDGCMHLIREVTAELPI 288

Query: 296 YLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFEMCRVLGLVD 355
           YLANSLNSLRLEGQKTAAIEILQQF+W+VPDWVIVPGGNLGNIYAFYKGF MC+ LGLVD
Sbjct: 289 YLANSLNSLRLEGQKTAAIEILQQFNWQVPDWVIVPGGNLGNIYAFYKGFHMCKELGLVD 348

Query: 356 RVPRLVCAQAANANPLYRYYKSGWTE-FTPQVAEPTFASAIQIGDPVSVDRAVVALKATD 414
           R+PRLVCAQAANANPLY +YKSG+ E F P  A  TFASAIQIGDPVS+DRAV ALK ++
Sbjct: 349 RIPRLVCAQAANANPLYLHYKSGFKEDFNPLKANTTFASAIQIGDPVSIDRAVYALKKSN 408

Query: 415 GIVEEATEEELMNAMSLADRTGMFACPHTGVALAALFKLRDQRIIGPNDRTVVVSTAHGL 474
           GIVEEATEEELM+A +LAD TGMF CPHTGVAL AL KLR   +IG NDRTVVVSTAHGL
Sbjct: 409 GIVEEATEEELMDATALADSTGMFICPHTGVALTALMKLRKSGVIGANDRTVVVSTAHGL 468

Query: 475 KFSQSKIDYHDSKIEDMACKYANPPVSVKADFGAVMDVLKKRLK 518
           KF+QSKIDYH   I++MAC+ ANPPV VKA FG+VMDVLK+ LK
Sbjct: 469 KFTQSKIDYHSKNIKEMACRLANPPVKVKAKFGSVMDVLKEYLK 512



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,685,917
Number of extensions: 453675
Number of successful extensions: 922
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 2
Length of query: 521
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 418
Effective length of database: 8,282,721
Effective search space: 3462177378
Effective search space used: 3462177378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)