Os01g0693800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS).
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Os01g0693800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.35 | 0.468 | 11.7 | 0.577 | 0.81 | -1.58 | 0.719 | 5.46 | 0.113 | 16.2 | 20.5 | 1232 | -- | -- |
| 122.83 | 0.516 | 11.8 | -0.479 | 0.896 | -1.79 | -0.135 | -- | -0.0717 | 15.5 | 8.94 | 7664 | -- | -- |
| 100.7 | 0.467 | 11.7 | 0.559 | 0.808 | -1.6 | -- | 5.39 | 0.108 | 16.3 | 20.58 | 1200 | -- | -- |
| 122.04 | 0.515 | 11.8 | -0.54 | 0.938 | -1.72 | -- | -- | -0.13 | 15.8 | 2.048 | 7750 | -- | -- |
| 135.27 | 0.542 | 11.7 | 0.512 | -- | -1.76 | -- | 5.21 | 0.107 | -- | 20.43 | 1189 | -- | -- |
| 169.4 | 0.61 | 11.9 | -1.42 | 0.962 | -- | 0.236 | -- | -0.604 | 15.6 | -- | -- | -- | -- |
| 169.56 | 0.61 | 11.9 | -1.41 | 0.962 | -- | -- | -- | -0.603 | 15.6 | -- | -- | -- | -- |
| 165.25 | 0.599 | 11.8 | -0.543 | -- | -1.81 | -- | -- | -0.163 | -- | 4.868 | 6955 | -- | -- |
| 127.52 | 0.526 | 11.8 | -- | 0.957 | -2.02 | -- | -- | 0.0184 | 15.8 | -16.97 | 7777 | -- | -- |
| 221.07 | 0.695 | 11.9 | -1.45 | -- | -- | -- | -- | -0.628 | -- | -- | -- | -- | -- |
| 222.22 | 0.697 | 11.9 | -- | 0.99 | -- | -- | -- | -0.445 | 15.6 | -- | -- | -- | -- |
| 170.23 | 0.608 | 11.8 | -- | -- | -2.11 | -- | -- | 0.028 | -- | -0.09065 | 8343 | -- | -- |
| 276.82 | 0.777 | 11.9 | -- | -- | -- | -- | -- | -0.467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 4 | 95.62 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 5 | 95.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 6 | 95.85 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 22 | 96.98 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 35 | 97.45 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 38 | 97.58 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 45 | 97.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 48 | 97.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 51 | 97.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 66 | 98.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 69 | 98.27 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 82 | 98.40 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 89 | 98.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 102 | 98.70 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 108 | 98.76 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 118 | 98.90 | radiation | 20 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 133 | 98.97 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 136 | 98.98 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 141 | 99.14 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 161 | 99.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 165 | 99.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 208 | 100.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 209 | 100.04 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 273 | 100.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 280 | 100.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 309 | 101.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 322 | 101.35 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 331 | 101.42 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 348 | 101.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 371 | 101.63 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 433 | 102.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 470 | 102.14 | radiation | 20 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 471 | 102.14 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 488 | 102.15 | radiation | 20 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 506 | 102.18 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 554 | 102.28 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 581 | 102.34 | radiation | 20 | 43200 | < th | dose independent | sin | 8 | NA |
| 596 | 102.40 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 598 | 102.41 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 619 | 102.44 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 670 | 102.55 | radiation | 10 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 695 | 102.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 727 | 102.70 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 783 | 102.92 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 824 | 102.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 847 | 102.99 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 849 | 103.00 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 888 | 103.12 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 901 | 103.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 905 | 103.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 915 | 103.18 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 928 | 103.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |